| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,794,206 – 21,794,288 |
| Length | 82 |
| Max. P | 0.841509 |
| Location | 21,794,206 – 21,794,288 |
|---|---|
| Length | 82 |
| Sequences | 4 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 82.32 |
| Shannon entropy | 0.29014 |
| G+C content | 0.42983 |
| Mean single sequence MFE | -23.15 |
| Consensus MFE | -17.25 |
| Energy contribution | -18.07 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.841509 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21794206 82 - 22422827 ACUUACAAAGCUUACUAGGGAAAUGGGCAGGAAGUUGCGCUAGUUAAUAGAACAGUAGCUUGUUUCCCAAAUCCUGGACCCU ..............((((((...((((.((.(((((((.(((.....)))....))))))).)).))))..))))))..... ( -23.90, z-score = -1.41, R) >droSim1.chrX 10477103 82 - 17042790 GCUUACAAAGCUUACUAGGGAAAUGGGCAGGAAGUUGCGCCAGUAAAUAUAACUGUAGUUCGUUUCCCAUUUCCUGGAAACU (((.....)))......((((((((((.(((.....((..((((.......))))..))...)))))))))))))(....). ( -22.40, z-score = -1.43, R) >droSec1.super_20 335437 78 - 1148123 GCUUACAAAGCUUACUAGGGAAAUAGGCAGGAAGUUGCGCCAGUAAAUAUAACUGUAGUUCGUUUCCCAUUUCCUGGA---- (((.....)))......(((((((..((((..(.((((....))))...)..)))).....)))))))..........---- ( -17.20, z-score = -0.09, R) >droYak2.chrX 7980266 79 - 21770863 ---CCUCAAGCUCAAUAGGGAAAUGGGCAGGAAGUUGCGCUAGUUAAUAGAAACGUAAUUUGUUUCCCAUUUCCCGGAAACU ---..............((((((((((.((.(((((((((((.....)))...)))))))).)).))))))))))(....). ( -29.10, z-score = -4.32, R) >consensus GCUUACAAAGCUUACUAGGGAAAUGGGCAGGAAGUUGCGCCAGUAAAUAGAACUGUAGUUCGUUUCCCAUUUCCUGGAAACU .................((((((((((.((.((((((((..............)))))))).)).))))))))))....... (-17.25 = -18.07 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:19 2011