| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,792,983 – 21,793,109 |
| Length | 126 |
| Max. P | 0.782493 |
| Location | 21,792,983 – 21,793,109 |
|---|---|
| Length | 126 |
| Sequences | 3 |
| Columns | 126 |
| Reading direction | forward |
| Mean pairwise identity | 63.76 |
| Shannon entropy | 0.51406 |
| G+C content | 0.58282 |
| Mean single sequence MFE | -48.53 |
| Consensus MFE | -25.74 |
| Energy contribution | -26.87 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.782493 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21792983 126 + 22422827 ACAAUGUUUGCCGCCAGUGCGGGCAACAAGGCCACACCGCGGCAAAGUGCCAAAACCCGGUGAACUGCCGGAACUGCCGUCACAGAGGGCAACCUACGGGGCAUUAUAUGCUCUCGAAUGUAUGCC .......(((((((..(((.((.(.....).)).))).)))))))((((((.....(((((.....))))).....((((.....(((....))))))))))))).(((((........))))).. ( -47.60, z-score = -1.20, R) >droVir3.scaffold_13036 417913 117 + 1135500 AGGACGUUUGCCGUCGCUGCGGCCAGAUGGGUCACCGCGUGGCUCAGUGCAGCAAUGCACUGAAUUGCCGCAAUUGCUCCUUUAAGGGGAAGCCAUCGGGUC---------UGUCUCUAGCCUGUC ..((((.....))))(((((((((.(((((........(((((((((((((....))))))))...))))).....((((.....))))...))))).)).)---------)))....)))..... ( -47.00, z-score = -1.26, R) >droGri2.scaffold_15056 31185 126 - 38174 AGGACGUCUGUCGUCGCUGCGGCCAAAUGGGUCACCGCGUGGCUCAGUGCAGCAAUGCACUGAACUGUCGCAAUUGCGCAUUCAAGGGUAGGCCGUCUGAGCAUCUCAUGAUGUCUCCAGCUUGCC ..((((.....))))(((((((((....((....))((((((.((((((((....)))))))).))).)))...(((.(......).))))))))...(((((((....)))).)))))))..... ( -51.00, z-score = -1.72, R) >consensus AGGACGUUUGCCGUCGCUGCGGCCAAAUGGGUCACCGCGUGGCUCAGUGCAGCAAUGCACUGAACUGCCGCAAUUGCCCAUUCAAGGGGAAGCCAUCGGGGCAU___AUG_UGUCUCAAGCAUGCC ....((((((((((....)))).))))))(.((...((((((.((((((((....)))))))).))).)))...............((....))....)).)........................ (-25.74 = -26.87 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:18 2011