| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,780,622 – 21,780,678 |
| Length | 56 |
| Max. P | 0.553241 |
| Location | 21,780,622 – 21,780,678 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 67.43 |
| Shannon entropy | 0.50756 |
| G+C content | 0.35668 |
| Mean single sequence MFE | -9.57 |
| Consensus MFE | -6.99 |
| Energy contribution | -4.12 |
| Covariance contribution | -2.87 |
| Combinations/Pair | 1.80 |
| Mean z-score | -0.48 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553241 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21780622 56 + 22422827 CAGGCAACUUGAGUGUUUGAGUACACAAGUUU-----CUUAUAUACAUACAUCGUUGUUCA ..((((((.((.((((.((((.((....))..-----))))...)))).))..)))))).. ( -10.10, z-score = -0.70, R) >droGri2.scaffold_15305 71734 60 + 185142 UGUGUGACCAGAGCUUCGAUAUUAAUCGGUAUAGCGAUAUUUAAGUAUUAAUCGUUGCUG- ...(..((....((((((((....)))))...)))(((((....)))))....))..)..- ( -9.90, z-score = 0.10, R) >droSec1.super_69 170690 56 + 174750 CAGGCAACUUGAGUUUUUGAGUACACAAGUUU-----CUUAUAUACAUACAUCGUUGUUCA .(((.((((((.((........)).)))))).-----)))..................... ( -7.30, z-score = -0.22, R) >droSim1.chrU 12764706 55 + 15797150 CAGGCAACUUGAGUGUUUGAGUACACAAGUUU-----CUUAUACACAUACAUCGUUGUUU- .(((((((.((.((((.((((.((....))..-----)))).))))...))..)))))))- ( -11.00, z-score = -1.11, R) >consensus CAGGCAACUUGAGUGUUUGAGUACACAAGUUU_____CUUAUAUACAUACAUCGUUGUUC_ ...(((((.((.((((.((((................)))).)))).))....)))))... ( -6.99 = -4.12 + -2.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:16 2011