| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,774,085 – 21,774,189 |
| Length | 104 |
| Max. P | 0.967276 |
| Location | 21,774,085 – 21,774,189 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 62.73 |
| Shannon entropy | 0.62349 |
| G+C content | 0.57566 |
| Mean single sequence MFE | -42.55 |
| Consensus MFE | -22.08 |
| Energy contribution | -21.95 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21774085 104 - 22422827 CUCGAAGUCCGACUCAGGA----GAUCGGAGCUAAUGU--UUGCGCUGGUGCAGGAGCCGUAUCUCGGCGGGGAUGGAAUGGAUGUGCUGCCUGAAGGAAUAAGGGUUUU (((....(((...(((((.----.(((((.((......--..)).)))))(((.(..(((((((((....)))))...)))).).)))..))))).)))....))).... ( -30.00, z-score = 0.67, R) >droAna3.scaffold_13278 39875 110 + 130239 UGCGAUGUGGGGCAGAUGAUGUGUGAAAGAGGCUGCGUCGUGGCGCUGUUGCAGGAGCCGUACAACCGCUACGGCGGUGUGCGCGGUUUGCCCGCAAAUAUGCGGGUAUU ((((((..((.((..(((((((((.......)).))))))).)).)))))))).((((((..(((((((....))))).))..))))))(((((((....)))))))... ( -50.60, z-score = -2.45, R) >droMoj3.scaffold_6499 265747 110 - 421677 UGUGAUGUGGGGGCUAUGAUGUGUGAAAGGGGCAGCGUCGUUGCCCUGCUGCAGGAACCCUACGCGACCGGUGGUUGCGUAAGGGGAUUGCCCGCAUGUAUGCGAGUAUU .((((((((.((((.....(.((((...((((((((...))))))))..)))).)..((((((((((((...)))))))).))))....)))).))))).)))....... ( -47.10, z-score = -2.43, R) >droGri2.scaffold_15056 6657 110 - 38174 UGCGAUGUGGGUGGCAUGAUCGUGAGAAGAGGCAGCGUAGUUGCCCUGCUGCAGGAACCCUACGUGACAAAUGGUUGCGUACGGGGAUUGCCCGCGGGUAUGCGAGUAUU .(((.((((((..((....((.((((.((.((((((...)))))))).)).)).)).(((((((..((.....))..)))).)))).)..))))))....)))....... ( -42.50, z-score = -1.69, R) >consensus UGCGAUGUGGGGCACAUGAUGUGGAAAAGAGGCAGCGUCGUUGCCCUGCUGCAGGAACCCUACGUCACCGAUGGUGGCGUACGGGGAUUGCCCGCAGGUAUGCGAGUAUU ((((.(((((....................((((((((....))))))))((((...(((((((((((.....)))))))..)))).)))))))))....))))...... (-22.08 = -21.95 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:15 2011