| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,298,184 – 12,298,282 |
| Length | 98 |
| Max. P | 0.752397 |
| Location | 12,298,184 – 12,298,282 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 70.35 |
| Shannon entropy | 0.56170 |
| G+C content | 0.49523 |
| Mean single sequence MFE | -34.07 |
| Consensus MFE | -13.68 |
| Energy contribution | -14.52 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.752397 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12298184 98 - 23011544 UAGCU-AUAGUUGAGAUUGCCUUGGCUGGUAGCUCUGUGUUUUGGCAUUGAAAAGU---ACCACAUUCAAGUGGGUUAGGGCCAGGUCUAAACUGGAUUGUA .((((-(((((..((.....))..))).))))))(((.(((((((((((....)))---.((((......)))))))))))))))((((.....)))).... ( -29.20, z-score = -0.85, R) >droSim1.chr2L 12098657 99 - 22036055 --GCU-AUAGUUGAGAUUGCCUUGGCUGGGAGCUCUCUGUUUUGGCAUUGAAAAGUGCCACCACACUCAAGUGGGUUAGGGCCAGGUCUAAACUGGAUUGUU --(((-.((((..((.....))..))))..))).(((((...(((((((....)))))))((((......))))..)))))((((.......))))...... ( -35.40, z-score = -1.74, R) >droSec1.super_16 487909 100 - 1878335 --GCUAAUAGUUGAGAUUGCCUUGGCUGGGAGCUCUCUGUUUUGGCAUUGAAAAGUGCCACCACACUCAAGUGGGUUAGGGCCAGGUCUAAACUGGAUUGUU --(((..((((..((.....))..))))..))).(((((...(((((((....)))))))((((......))))..)))))((((.......))))...... ( -36.80, z-score = -2.17, R) >droYak2.chr2L 8728623 99 - 22324452 GCCCCCACCGAUGAGUUUGCCUUGGCUGGGAGCUCGGUGUUUUGGCAUUGAAAAGU---GCCACACUCAAGUGGGUUAGGGCCAGGUCUAAACUAGACUGGA ((((..(((.((((((((.((......))))))))(((((...((((((....)))---))))))))...)).)))..))))..((((((...))))))... ( -38.20, z-score = -1.36, R) >droEre2.scaffold_4929 13521111 93 + 26641161 ------GCCGAUGAGAUUGCCUUGGCUGGGAGCUCGGUGUUGUGGCAUUGGAAAGU---GCCACAAUCAAGUGGGUUAGGGCCAGGUCCAAACUGGACUGCA ------((.(.(.((.(((.(((((((...((((((.((((((((((((....)))---))))))).))..))))))..)))))))..))).)).).).)). ( -38.80, z-score = -2.17, R) >droVir3.scaffold_12963 17378586 95 - 20206255 ----CCUCAGUUCAAGUCAA--UGUCUGAGACCGCGAAACUAUCAGAUGACAAGGUUUCG-CGUUUUGACAUUGCCCCAGCAGUUGCUUAACCUAGUUUGCA ----...........(.(((--((((.(((((.((((((((.((....))...)))))))-))))))))))))))....((((..(((......))))))). ( -26.00, z-score = -2.11, R) >consensus __GCU_ACAGUUGAGAUUGCCUUGGCUGGGAGCUCGGUGUUUUGGCAUUGAAAAGU___ACCACACUCAAGUGGGUUAGGGCCAGGUCUAAACUGGAUUGUA ..................((((((((.......((..(((....)))..)).........((((......))))))))))))..(((((.....)))))... (-13.68 = -14.52 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:49 2011