| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,658,794 – 21,658,866 |
| Length | 72 |
| Max. P | 0.991419 |
| Location | 21,658,794 – 21,658,866 |
|---|---|
| Length | 72 |
| Sequences | 6 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 54.68 |
| Shannon entropy | 0.88991 |
| G+C content | 0.38991 |
| Mean single sequence MFE | -17.29 |
| Consensus MFE | -5.12 |
| Energy contribution | -6.04 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 2.00 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.48 |
| SVM RNA-class probability | 0.991419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21658794 72 - 22422827 CAUUUUUACGAUUAGAAGACUCCUCACUGCCAUACUUCGAAUGUAGAGUGAGGAGUGGAAAGGUUCUAAAAG ...(((((.((((.....((((((((((....(((.......))).)))))))))).....)))).))))). ( -19.00, z-score = -2.01, R) >droYak2.chrU 14391085 62 + 28119190 ----------UUAGAACGGGUCAUCUCUACCAUACUUCCAAUGCAUCAUGGAAGAUGGCACCAAACUAAAUU ----------((((...(((....)))..((((.((((((........)))))))))).......))))... ( -14.10, z-score = -2.36, R) >droAna3.scaffold_13339 2733898 72 + 4599533 UAUUUUUUAGAAUAAACCGUUCCUCCUUACCCAAUUUUAAGGUAACUAUCGGGAACGGCAAAACUCUGAAAU ....(((((((.....((((((((..(((((.........))))).....))))))))......))))))). ( -18.90, z-score = -3.58, R) >droWil1.scaffold_180772 2370027 71 - 8906247 -AUUUUUUAGGAUGAAGUGUUCCUCUUUGCCGUACUUUGUAGUCCGGGACAAAGACGGAACAGCAUACAAUU -........(.(((...(((((((((((((((.(((....))).)))..)))))).)))))).))).).... ( -20.60, z-score = -2.60, R) >droVir3.scaffold_12954 1739403 72 + 2014198 AAUUUUUUAGGAUAAGGAGCUCCUCUCUUCCUUACAUAGAAUGUAAGAUGCGGAGCGGAAAGUUACUCAAAA ..................(((((.(.....(((((((...)))))))..).)))))................ ( -13.60, z-score = 0.13, R) >droMoj3.scaffold_6500 31595647 72 - 32352404 AAUUUUUUAGCUUAAAUCGUUCCUCGUUACCUUACUUCCAAUGCAAAACGAGGGACGGACAGGUACUGAACU .........((((...((((((((((((..................))))))))))))..))))........ ( -17.57, z-score = -2.29, R) >consensus _AUUUUUUAGAAUAAACCGUUCCUCUCUACCAUACUUCGAAUGCAAAAUGAGGAACGGAAAGGUACUAAAAU ..................((((((((((..................))))))))))................ ( -5.12 = -6.04 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:08 2011