| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,507,944 – 21,508,048 |
| Length | 104 |
| Max. P | 0.887733 |
| Location | 21,507,944 – 21,508,048 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 79.17 |
| Shannon entropy | 0.29295 |
| G+C content | 0.45678 |
| Mean single sequence MFE | -26.27 |
| Consensus MFE | -15.38 |
| Energy contribution | -14.83 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887733 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21507944 104 - 22422827 GAUGAGUCCAAGGCCACCAAUGAGUGCCCCGGAUUAUCUAAUUCAGAGGAAACCCCUCUACAUACACAGAAAAAGGAGGAAACCCUCCAGAAAAUUAAGCGGAA (((((.(((..(((.((......)))))..))))))))...((((((((.....)))))...............(((((....))))).)))............ ( -27.70, z-score = -2.61, R) >droSim1.chrU 8608322 101 + 15797150 GAUGAGUCCAAGGGCGU---UGAGUGCCCCAGGUCAUCUAACGCAGAGGAAAGCCCUCUACACACACCAAAAAAGGAGAAACCCCUCAGGAAAACUAAUCGGAA (((...(((..((((((---((..((((...)).))..))))))(((((.....))))).......)).......(((......))).)))......))).... ( -26.80, z-score = -1.15, R) >droEre2.scaffold_4929 24011143 104 - 26641161 GAUGAGUCAAAGGUUACCAAUAAAUACCCCAACUCAUCUAACCUAGAGGAAACCCCUCUACAUACCCCAAAAAAGGAGAAAACCCUCCGUAAAAUUAAGUGGAA (((((((....(((...........)))...)))))))...((((((((.....))))))..............((((......))))............)).. ( -24.30, z-score = -3.72, R) >consensus GAUGAGUCCAAGGCCACCAAUGAGUGCCCCAGAUCAUCUAACCCAGAGGAAACCCCUCUACAUACACCAAAAAAGGAGAAAACCCUCCGGAAAAUUAAGCGGAA (((((......((.((........)))).....)))))......(((((.....)))))...............((((......))))................ (-15.38 = -14.83 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:03 2011