Locus 15844

Sequence ID dm3.chrX
Location 21,462,734 – 21,462,876
Length 142
Max. P 0.794117
window21835

overview

Window 5

Location 21,462,734 – 21,462,876
Length 142
Sequences 3
Columns 150
Reading direction forward
Mean pairwise identity 90.65
Shannon entropy 0.13133
G+C content 0.35652
Mean single sequence MFE -34.37
Consensus MFE -24.45
Energy contribution -24.57
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.56
Structure conservation index 0.71
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.71
SVM RNA-class probability 0.794117
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 21462734 142 + 22422827
--------GGAAAAAGUCUAGACAGUCCGAUUAGAAUAUUUCUGUUAUCGAGACAGCGACAUACUUAUCGGAUGAUAUCGGAAUUAUCGAUAUUAUCAACAUUUUAAUCGCGUUUUCCAAUUACUAUUUUGUGAUUUCCUUACCUUCUGA
--------((((((..........(((((((((((.....))))..)))).))).((((...........(((((((((((.....)))))))))))..........)))).))))))((((((......)))))).............. ( -33.80, z-score =  -2.33, R)
>droSim1.chrX_random 5557212 149 + 5698898
GGAGAGCAACCAAAAGUCUAGACAGUCCGAGCAGAAUUUU-CUGUUAUCGAGACAGCGACAUACUUAUCGGAUAAUAUCGGAAUUAUCGAUAUAAUCAACAUUUUAAUCGCGUUUUCCAAUUACUAUUUUGUGAUUUCCUUACCUUCCCA
(((((((.................(((((((((((....)-))))..))).))).((((...........(((.(((((((.....))))))).)))..........)))))))))))((((((......)))))).............. ( -36.10, z-score =  -3.25, R)
>droSec1.super_8 3750043 149 + 3762037
GGAGAGCAACCAAAAGUCUAGACAGUCCGAGCAGAAUGUU-CUGUUAUCGAGACAGCGACAUACUUAUCGGAUAAUAUCGGAAUUAUCGAUAUAAUCAACAUUUUAAUCGCGUUUUACAAUUACUAUUUUGUGAUUUCCUUACCUUCACA
(((((((.................((((((..((.(((((-(((((.....))))).))))).))..)))))).(((((((.....)))))))................))...((((((........)))))))))))........... ( -33.20, z-score =  -2.10, R)
>consensus
GGAGAGCAACCAAAAGUCUAGACAGUCCGAGCAGAAUAUU_CUGUUAUCGAGACAGCGACAUACUUAUCGGAUAAUAUCGGAAUUAUCGAUAUAAUCAACAUUUUAAUCGCGUUUUCCAAUUACUAUUUUGUGAUUUCCUUACCUUCACA
...................((((.((((((((((.......))))..))).))).((((...........(((.(((((((.....))))))).)))..........))))))))...((((((......)))))).............. (-24.45 = -24.57 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:57 2011