| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,452,451 – 21,452,571 |
| Length | 120 |
| Max. P | 0.632315 |
| Location | 21,452,451 – 21,452,571 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 59.37 |
| Shannon entropy | 0.61872 |
| G+C content | 0.35952 |
| Mean single sequence MFE | -19.03 |
| Consensus MFE | -5.80 |
| Energy contribution | -7.92 |
| Covariance contribution | 2.12 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.632315 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21452451 120 - 22422827 ACAACUUAGAUUCAAUUUCUCUGAUUACUACU-UUGAGUAUCACAGAAUCGAAAACUAAUUCACGGAAUUGUACAAGUUCCACCUUUGGACAAAACCAUACCAUAAAAAACUGGUAACCAA .....((((.(((...((((.((((.(((...-...))))))).))))..)))..)))).....((((((.....)))))).....(((......)))(((((........)))))..... ( -20.60, z-score = -1.74, R) >droSim1.chrX 16535957 101 - 17042790 ---------------ACAACUCAGAUUCAACU-UCUAUUA----AGAGUCGAAAAAUAUUUCGUGGAAUUGUACAAGUUCCACCUUUGGACAAAACCAUACCAUAUAAAACUGGUAACCAA ---------------........(((((....-.......----.)))))((((....))))((((((((.....))))))))...(((......)))(((((........)))))..... ( -19.80, z-score = -2.11, R) >droSec1.super_8 3737746 96 - 3762037 --------------------ACAACAACAACU-UCUAUUA----AGAGUCGAAAAAUAUUUCGUGGAAUUGUACAAGUUCCACCUUUGGACAAAACCAUACCAUAUAAAACUGGUAACCAA --------------------............-.......----...(((((((....))))((((((((.....)))))))).....))).......(((((........)))))..... ( -18.50, z-score = -2.06, R) >droYak2.chrU 18114448 92 + 28119190 -------------------CCAGCGCUUAGCUACCUGCUA----AGAUAAACAAUCAAACUCCAAAAAAAACACAGCUUCCGC--UUGG---AAACCAAACCAUGGUCAACUUAUUGCGC- -------------------...(((((((((.....))))----)(((((..........((((..........(((....))--))))---).((((.....))))....)))))))))- ( -17.20, z-score = -1.79, R) >consensus ___________________CCCAAAUACAACU_UCUAUUA____AGAGUCGAAAAAUAAUUCGUGGAAUUGUACAAGUUCCACCUUUGGACAAAACCAUACCAUAUAAAACUGGUAACCAA ..............................................................((((((((.....))))))))...(((......)))(((((........)))))..... ( -5.80 = -7.92 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:56 2011