| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,443,122 – 21,443,215 |
| Length | 93 |
| Max. P | 0.835618 |
| Location | 21,443,122 – 21,443,215 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 75.22 |
| Shannon entropy | 0.44004 |
| G+C content | 0.38244 |
| Mean single sequence MFE | -20.71 |
| Consensus MFE | -14.58 |
| Energy contribution | -15.10 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835618 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21443122 93 - 22422827 AUAGAAUGGAAGAAAAAUGGAAAUGAUAAUAAUCUGGAAAGUAGAGCUCAGUAAUUUUACAAAUUUGGCAAUGCCUUCAAGACCUGUGCGGAG ................................(((.(((.(((..((.(((.............)))))..))).))).)))((.....)).. ( -9.22, z-score = 2.12, R) >droEre2.scaffold_4690 17924565 86 - 18748788 --GAGAUUG--UUGUGAA--AUUCCCUUAAGGUCAGGAAAGUAUAGCUCAGUGA-UUUGCGAAUUUAGCAAUACAUUCUAGACCUUUGCGGAG --.......--.......--..(((...((((((.((((.((((.(((.(((..-.......))).))).)))).)))).))))))...))). ( -22.60, z-score = -2.01, R) >droYak2.chrX 20580813 89 - 21770863 --GACGUCU--UUGUGAAUUAUUCCCUUAAGGUCAGAAAUGUAUAGCUUAGUGGCUUUACAAAUUUGGCAAUACAUUUAAGACCUUAGCGGAG --.......--...........(((.((((((((..((((((((.(((...((......)).....))).))))))))..)))))))).))). ( -27.10, z-score = -3.77, R) >droSec1.super_8 3725843 91 - 3762037 --GACUUUUUGUAGUGAAGUAUUCCCUCAAGGUCUAGAAAGUAGAGCUCAGUAAUUUUACAAAUUUGGCAAUGCAUUCAAGACCUGUGCGGAG --.(((((.......)))))..((((...((((((.(((.(((..((.(((.............)))))..))).))).))))))..).))). ( -22.32, z-score = -1.36, R) >droSim1.chrX 16526664 91 - 17042790 --GACUUUUUGUAGUGAAGUAUUCCCUCAAGGUCUAGAAAGUAGAGCUCAGUAAUUUUACAAAUUUGGCAAUGCAUUCAAGACCUGUGCGGAG --.(((((.......)))))..((((...((((((.(((.(((..((.(((.............)))))..))).))).))))))..).))). ( -22.32, z-score = -1.36, R) >consensus __GACAUUU__UAGUGAAGUAUUCCCUCAAGGUCUGGAAAGUAGAGCUCAGUAAUUUUACAAAUUUGGCAAUGCAUUCAAGACCUGUGCGGAG ......................(((....((((((.(((.(((..(((.(((..........))).)))..))).))).))))))....))). (-14.58 = -15.10 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:52 2011