| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,442,349 – 21,442,443 |
| Length | 94 |
| Max. P | 0.664758 |
| Location | 21,442,349 – 21,442,443 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 89.89 |
| Shannon entropy | 0.18895 |
| G+C content | 0.46917 |
| Mean single sequence MFE | -14.68 |
| Consensus MFE | -11.46 |
| Energy contribution | -11.46 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.664758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21442349 94 - 22422827 UCCUUGGCCGCAAGUCCUCGUCGGUAAUUAUUGUAUUACCAAAUUAGUAGCUUCUCAUUCCAGUCGCCCAUUCCAUCGCCACCCACCUAAUUUU ....(((((....)........((((((......)))))).........((..((......))..))..........))))............. ( -12.60, z-score = -1.47, R) >droEre2.scaffold_4690 17923802 94 - 18748788 UCCUUGGCCACAAGUCCUCGUCGGUAAUUAUUGUAUUACCAAAUUAGGAGCUUCCCAUUCCCGUCGCCAUUCCCACCGCCACCCACGUAAUUUU ....((((.((...........((((((......))))))......((((.......)))).)).))))......................... ( -15.30, z-score = -1.28, R) >droYak2.chrX 20580072 83 - 21770863 UCCUUGGCCGCAAGUCCUUGUCGGUAAUUAUUGUAUUACCAAAUAAGGAGCUUCCCAUUCC-----------CCAUCGCCACCCACCUAAUUUU ....(((((....)(((((((.((((((......))))))..)))))))............-----------.....))))............. ( -18.70, z-score = -3.21, R) >droSec1.super_8 3725085 94 - 3762037 UCCUUGGCCGCAAGUCCUCGUCGGUAAUUAUUGUAUUACCAAAUUAGUAGCUUCUCAUUCCAGUCGCCCCUUCCAUCGCCACCCACCUAAUUUU ....(((((....)........((((((......)))))).....((..((..((......))..))..))......))))............. ( -13.50, z-score = -1.80, R) >droSim1.chrX 16525892 93 - 17042790 -CCUUGGCCGCAAGUCCUCGUCGGUAAUUAUUGUAUUACCAAAUUAGUAGCUUCUCAUUCCAGUCGCCCGUUCCAUCGCCACCCACCUAAUUUU -....((.(....).)).....((((((......))))))(((((((..((..((......))..)).((......))........))))))). ( -13.30, z-score = -1.37, R) >consensus UCCUUGGCCGCAAGUCCUCGUCGGUAAUUAUUGUAUUACCAAAUUAGUAGCUUCUCAUUCCAGUCGCCC_UUCCAUCGCCACCCACCUAAUUUU ....(((((....)........((((((......)))))).....................................))))............. (-11.46 = -11.46 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:51 2011