| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,284,644 – 12,284,747 |
| Length | 103 |
| Max. P | 0.582955 |
| Location | 12,284,644 – 12,284,747 |
|---|---|
| Length | 103 |
| Sequences | 10 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 72.72 |
| Shannon entropy | 0.58659 |
| G+C content | 0.44129 |
| Mean single sequence MFE | -25.36 |
| Consensus MFE | -12.53 |
| Energy contribution | -12.44 |
| Covariance contribution | -0.09 |
| Combinations/Pair | 1.05 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.582955 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 12284644 103 + 23011544 -AACGGAAGGUGGCAAUUUAAUAAAAUGCUUGAGUGAGUCGCCGAGUUUUGUUUCCUGCU--UGGCUCACG------CUUCUUCUUUCCUCUCUUUCCUGCAAUUUUUCCUU--- -...((((((.(((...((((........))))((((...(((((((..........)))--)))))))))------))....)))))).......................--- ( -22.70, z-score = -0.63, R) >droSim1.chr2L 12084646 110 + 22036055 -AACGGAAGGUGGCAAUUUAAUAAAAUGCUUGAGUGAGUCGCCGAGUUUUGUUUCCUGCU--UGGCUCAAGCUUUUUUCCUCUCUUACCACGCCUUACUUCAAUUUUUUCCUU-- -....((((..(((.((((....))))(((((((.....)(((((((..........)))--))))))))))...................)))...))))............-- ( -24.50, z-score = -0.93, R) >droSec1.super_16 474508 110 + 1878335 -AACGGAAGGUGGCAAUUUAAUAAAAUGCUUGAGUGAGUCGCCGAGUUUUGUUUCCUGCU--UGGCUCAAGCUUCUUUCCUCUCUUACCACGCCUUACUCCAUUUUUUUCCUU-- -...((((((((...((((....))))(((((((.....)(((((((..........)))--))))))))))..................)))))...)))............-- ( -23.80, z-score = -0.71, R) >droYak2.chr2L 8714775 109 + 22324452 -AACGGAAGGUGGCAAUUUAAUAAAAUGCUUGAGUGAGUCGCCGAGUUUUGUUUCCUGCU--UGGAUUUGG---CUCACGCUUCUUUCCUCUUCGUACUACAAUUUUGCCUUUUU -...((((((.(((...((((........))))(((((((.((((((..........)))--)))....))---)))))))).)))))).......................... ( -28.40, z-score = -1.67, R) >droEre2.scaffold_4929 13507861 100 - 26641161 -AACGGAAGGUGGCAAUUUAAUAAAAUGCUUGAGUGAGUCGCCGAGUUUUGUUUCCUGCU--UGG---------CUCACGCUUCUUUCCGCUCCUUACUCCAAUUUUCCCUU--- -...(((((((((((.(((....))))))).(((((((..(((((((..........)))--)))---------)....((........))..)))))))..)))))))...--- ( -26.20, z-score = -1.81, R) >droAna3.scaffold_12916 3070450 109 - 16180835 -AGCGGAAGGUGGCAAUUUAAUAAAAUGCUUGAGUGAGUCGCCGAGUUUUGUUUCCUGCU--UGGCUCUCGCUUCUGUUGCCUUUCGUCGUUGCUUACUACAAUUUUCUUCC--- -.((((((((..(((((((....))))....(((((((..(((((((..........)))--)))).))))))).)))..))))))))........................--- ( -34.70, z-score = -3.33, R) >dp4.chr4_group3 5855366 111 - 11692001 -AACGGAAGGUGGCAAUUUAAUAAAAUGCUUGAGUGAGUCGCCGAGUUUUGUUUCCUGGUUUUGGCUCCACUUUUUAUUCUUGCUCUCUUCGUUGGAUCUCCUUUCUCCUCC--- -((((.(((..(((((...((((((......(((((((((((((.(........).))))...)))).))))))))))).)))))..)))))))((....))..........--- ( -23.00, z-score = 0.07, R) >droPer1.super_1 2957831 111 - 10282868 -AACGGAAGGUGGCAAUUUAAUAAAAUGCUUGAGUGAGUCGCCGAGUUUUGUUUCCUGGUUUUGGCUCCACUUUUUAUUCUUGCUCUCUUCUUUGGAUCUCCAUUCCCCUCC--- -...(((((..(((((...((((((......(((((((((((((.(........).))))...)))).))))))))))).)))))..))))).(((....))).........--- ( -24.30, z-score = -0.35, R) >droWil1.scaffold_180708 9978964 98 + 12563649 GAACGGAAGGUGGCAAUUUAAUAAAAUGCUUGAGUGAGUCGCCGAGUUUUGUUUCCUGUGU-UGGCUCCCCUCCUGGCUUCUGCCUUCUGGUUUUUGCC---------------- ....(((.((..((.((..((((((..(((((.(((...))))))))))))))....))..-..))..)).))).(((....(((....)))....)))---------------- ( -24.60, z-score = -0.33, R) >droVir3.scaffold_12963 17362400 85 + 20206255 -AACGGAAGGUGGCAAUUUAAUAAAAUGCUUGAGUGAGUCGCCGAGUUUUGUUUCCUGCUG-CGGAUCCUGCUGCUGCUGCUCCUUA---------------------------- -...(((.((..(((....((((((..(((((.(((...)))))))))))))).......(-(((...)))))))..))..)))...---------------------------- ( -21.40, z-score = 0.04, R) >consensus _AACGGAAGGUGGCAAUUUAAUAAAAUGCUUGAGUGAGUCGCCGAGUUUUGUUUCCUGCU__UGGCUCCAGCUUCUGUUCCUUCUUUCCUCUCCUUACUUCAAUUUUCCCCU___ .(((((((((((((.((((((........))))))..))))))...))))))).............................................................. (-12.53 = -12.44 + -0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:45 2011