| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,433,513 – 21,433,607 |
| Length | 94 |
| Max. P | 0.930453 |
| Location | 21,433,513 – 21,433,607 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 80.62 |
| Shannon entropy | 0.35678 |
| G+C content | 0.49831 |
| Mean single sequence MFE | -35.46 |
| Consensus MFE | -26.34 |
| Energy contribution | -26.38 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.930453 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21433513 94 + 22422827 ---------------AUAUUAAGGCAAGGUGAAAGUCAUUUCAGCGCUGCGGCUGGAGGAGCUGGCAAUUUAAAGGAGAAUUGCACGGACUUCCUCGGGUUAACAUGAU ---------------........(((.(.(((((....))))).)..)))((((.((((((((((((((((......))))))).))).).))))).))))........ ( -31.10, z-score = -2.82, R) >droSim1.chrX 16516163 109 + 17042790 UUAUCGUCUCCCUUGCCAAGAUGGCAAGGUGAAAGUAUUUUCAGCGCUGCGGCUGGAGGAGCUGGCAAUUUAAAGCAGAAUUGCACGGACUUCCUCGGGUUAACAUGAU ..(((((.(((((((((.....))))))).))..((.....((((......))))((((((((((((((((......))))))).))).).)))))......))))))) ( -37.70, z-score = -1.92, R) >droSec1.super_8 3715406 109 + 3762037 UUAUCGUCUCUCUCGCCAAGAUGGCAAGGUGAAAGUAUUUUCAGCGCUGCGGCUGGAGGAGCUGGCAAUUUAAAGCAGAAUUGCACGGACUUCCUCGGGUUAACAUGAU ....(((((.........)))))(((.(.(((((....))))).)..)))((((.((((((((((((((((......))))))).))).).))))).))))........ ( -32.30, z-score = -0.48, R) >droYak2.chrX 20570570 109 + 21770863 AUACCAUAUCCAUUGCCAAGAUGGCGAGGUGACAGGAUUUUCAGGGAUGCGGCUGCAGGAGUCGGCGAUUUAAAGUAGAAUUGCACGGACUUCCUCGGGCUAACAUGAU ...((.(((((.(((((.....)))))(....)...........))))).))(((.(((((((.(((((((......)))))))...))).)))))))........... ( -33.10, z-score = -1.17, R) >droEre2.scaffold_4690 17915546 108 + 18748788 AUGUCAU-CGCACUGCCAAGUUGGCAAGGUGAAAGUAUUUGCAGGACUGCGGCUGGAGGAGCUGGCGAUUCGAAGGGGAAUGGCACGGACUUCCUCGGGCCAACAUGAU ..(((((-(((..((((.....))))..))))..((....(((....)))((((.(((((((((((.((((......)))).)).))).).))))).)))).)).)))) ( -43.10, z-score = -2.68, R) >consensus AUAUCAU_UCCAUUGCCAAGAUGGCAAGGUGAAAGUAUUUUCAGCGCUGCGGCUGGAGGAGCUGGCAAUUUAAAGCAGAAUUGCACGGACUUCCUCGGGUUAACAUGAU .......................(((.(.(((((....))))).)..)))((((.((((((((((((((((......))))))).))).).))))).))))........ (-26.34 = -26.38 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:50 2011