| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,428,070 – 21,428,160 |
| Length | 90 |
| Max. P | 0.887424 |
| Location | 21,428,070 – 21,428,160 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 61.28 |
| Shannon entropy | 0.73689 |
| G+C content | 0.54717 |
| Mean single sequence MFE | -17.90 |
| Consensus MFE | -8.70 |
| Energy contribution | -9.13 |
| Covariance contribution | 0.43 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21428070 90 - 22422827 --------------UCCCCUCCCCCACCAAAAUCCACUCCAGCCAGCAGCACCUCGAUGCGCACAUGUGCGC-GCUUAAAUUAUUCAACGGAAGUCGCUCCAAAA- --------------...............................(.(((........(((((....)))))-..............((....)).))).)....- ( -14.30, z-score = -0.88, R) >droSim1.chrX_random 5548893 83 - 5698898 ------------------UCCCCCCACAAAAAUCCACUCCAGC---CAGCACCUCGAUGCGCACAUGUGCGC-GCUUAAAUUAUUCAACGGAAGUCGCUCCAAAA- ------------------.........................---.(((........(((((....)))))-..............((....)).)))......- ( -13.40, z-score = -0.87, R) >droSec1.super_8 3709202 83 - 3762037 ------------------UCCCCCCACCAAAAUCCACUCCAGC---CAGCACCUCGAUGCGCACAUGUGCGC-GCUUAAAUUAUUCAACGGAAGUCGCUCCAAAA- ------------------.........................---.(((........(((((....)))))-..............((....)).)))......- ( -13.40, z-score = -0.93, R) >droYak2.chrX 20564661 97 - 21770863 CUACGCCCUCGCCCCCAUCCACUCCACCAAAAUCCACUC-------CAGCAGCCUGAUGCGCACAUGUGCGC-GCUUAAAUUAUUCAACGGAAGUCACUCCAAAA- ..........((...........................-------(((....)))..(((((....)))))-))..............(((......)))....- ( -13.80, z-score = -0.47, R) >droEre2.scaffold_4690 17908996 69 - 18748788 -----------------------------------GCCCCCAAUGGGGGCACCCCGAUGCGCACAUGUGCGC-GCUUAAAUUAUUCAACGGAAGUCGCUCCAAAA- -----------------------------------((((((...))))))........(((((....)))))-................(((......)))....- ( -24.30, z-score = -1.78, R) >droVir3.scaffold_13042 637739 90 + 5191987 -----UCUCCUGGCCGCCCCCCUGACCCCAGACUCUGCUCGGCGGGCUCUUCUUUUUCGCGCACAUGUGCGCCGUUUAAAUUAUUCAACGGAAGC----------- -----..(((.(((.((((.((.((...(((...))).)))).))))...........((((....)))))))(((.((....)).))))))...----------- ( -22.80, z-score = 0.08, R) >droMoj3.scaffold_6359 3580704 95 + 4525533 ---------CCCCUUGCCCCUCUGCUCUACUGUCCCGCUAGGCGGG--CAUCUUUUUCGCGCACAUGUGCGCUGUUUAAAUUAUUCAACGGAAGCAACUCCACGAG ---------.....(((((((..((...........))..)).)))--))......(((((((....))))).................(((......)))..)). ( -23.30, z-score = -0.69, R) >consensus __________________CCCCCCCACCAAAAUCCACUCCAGC__GCAGCACCUCGAUGCGCACAUGUGCGC_GCUUAAAUUAUUCAACGGAAGUCGCUCCAAAA_ ..........................................................(((((....))))).................(((......)))..... ( -8.70 = -9.13 + 0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:49 2011