| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,374,121 – 21,374,234 |
| Length | 113 |
| Max. P | 0.774633 |
| Location | 21,374,121 – 21,374,234 |
|---|---|
| Length | 113 |
| Sequences | 10 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 84.11 |
| Shannon entropy | 0.33429 |
| G+C content | 0.48031 |
| Mean single sequence MFE | -27.30 |
| Consensus MFE | -15.87 |
| Energy contribution | -16.07 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.774633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21374121 113 + 22422827 GAGCAACAAACCAGCAUUAACACCAUCAAAGUUGGUAAACAGAGAUACAGCACGUAUCUAAUAAAAGGCCACAACGUGAUGCCA-GCGUCGUGGUCGCGACAAGCGACUAGCGC .........((((((...............))))))......((((((.....)))))).......((((((...)))..))).-((((..(((((((.....))))))))))) ( -30.56, z-score = -2.18, R) >droEre2.scaffold_4690 17893764 113 + 18748788 GAGCAACAAACCAGCAUUAACACCAUCAAAGUUGGUAAACAGAGAUACAGCACGUAUCUAAUAAAAGGCCACAACGUGAUGCCA-GCGUCGUGGUCGCGACAAGCGACUAGCCC .........((((((...............))))))......((((((.....)))))).......((((((.((((.......-)))).)))(((((.....)))))..))). ( -30.46, z-score = -2.65, R) >droYak2.chrX 20547983 113 + 21770863 GAGCAACAAAGCAGCAUUAACACCAUCAAAGUUGGUAAACAGAGAUACAGCACGUAUCUAAUAAAAGGCCACAACGUGAUGCCA-GCGUCGUGGUCGCGGCAAGCUCCUAGCGC ((((......((.((......((((.......))))......((((((.....)))))).......((((((.((((.......-)))).)))))))).))..))))....... ( -31.10, z-score = -1.62, R) >droSec1.super_8 3692512 113 + 3762037 GAGCAACAACCCAGCAUUAACACCAUCAAAGUUGGUAAACAGAGAUACAGCACGUAUCUAAUAAAAGGCCACAACGUGAUGCCA-GCGUCGUGGCCGCGACAAGCGACUAGCGC ..((.........((......((((.......))))......((((((.....)))))).......((((((.((((.......-)))).)))))))).....((.....)))) ( -31.20, z-score = -2.32, R) >droSim1.chrX 16506758 113 + 17042790 GAGCAACAAACCAGCAUUAACACCAUCAAAGUUGGUAAACAGAGAUACAGCACGUAUCUAAUAAAAGGCCACAACGUGAUGCCA-GCGUCGUGGUCGCGACAAGCGACUAGCGC .........((((((...............))))))......((((((.....)))))).......((((((...)))..))).-((((..(((((((.....))))))))))) ( -30.56, z-score = -2.18, R) >dp4.chrXL_group1a 7878383 105 - 9151740 GAGCAACAAACCAGCAUUAACACCAUCAAAGUUGGUAAACAGAGAUACAGCACGUAUCUAAUAAAAGGCCACAACGUGAUGCCACGACAAGCGGUCGCCCAGCAC--------- ..((.....((((((...............))))))......((((((.....)))))).......((((.(..((((....))))....).)))).....))..--------- ( -22.76, z-score = -2.01, R) >droPer1.super_53 504968 105 + 525408 GAGCAACAAACCAGCAUUAACACCAUCAAAGUUGGUAAACAGAGAUACAGCACGUAUCUAAUAAAAGGCCACAACGUGAUGCCACGACAAGCGGUCGCCCAGCAC--------- ..((.....((((((...............))))))......((((((.....)))))).......((((.(..((((....))))....).)))).....))..--------- ( -22.76, z-score = -2.01, R) >droWil1.scaffold_181096 10987680 111 - 12416693 CAACAAGAAGCCAGCAUUAACACCAUCAAAGUUGGUAAACAAAGAUACAGCACGUAUCUAAUAAAAGGCCACAACGUGAUGCCA-GCG--GUGGUCGCGACAAUCGGUGGACGC ......................(((((...((((........((((((.....)))))).......((((((..(((.......-)))--)))))).))))....))))).... ( -25.00, z-score = -0.48, R) >droVir3.scaffold_13042 622971 92 - 5191987 ---GAACAAAA-GGCAUUAACACCAUCAAACUUGGUAAACAGAGAUACAGCACGUAUCUAAUAAAAGGCCACAACGUGCUGCCA----ACGCGGUCGCGA-------------- ---........-(((......((((.......))))......((((((.....))))))........)))....((((((((..----..)))).)))).-------------- ( -24.30, z-score = -2.79, R) >droMoj3.scaffold_6359 3564467 92 - 4525533 ---GAACAAAA-GGCAUUAACACCAUCAAACUUGGUAAACAGAGAUACAGCACGUAUCUAAUAAAAGGCCACAACGUGCUGCCA----ACGCGGUCGCGA-------------- ---........-(((......((((.......))))......((((((.....))))))........)))....((((((((..----..)))).)))).-------------- ( -24.30, z-score = -2.79, R) >consensus GAGCAACAAACCAGCAUUAACACCAUCAAAGUUGGUAAACAGAGAUACAGCACGUAUCUAAUAAAAGGCCACAACGUGAUGCCA_GCGUCGUGGUCGCGACAAGCG_CUAGCGC .............((........(((((....((((......((((((.....))))))........)))).....)))))((.........))..))................ (-15.87 = -16.07 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:47 2011