| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,364,286 – 21,364,346 |
| Length | 60 |
| Max. P | 0.808606 |
| Location | 21,364,286 – 21,364,346 |
|---|---|
| Length | 60 |
| Sequences | 3 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 92.18 |
| Shannon entropy | 0.10713 |
| G+C content | 0.43511 |
| Mean single sequence MFE | -13.17 |
| Consensus MFE | -12.29 |
| Energy contribution | -12.07 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.808606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21364286 60 + 22422827 CAGAGCUGUUAGAUUCGGCAACACAAGAGCAGGAAAAAAAAUGGAUUCCUGCCGAAAGAA ....((((.......)))).........(((((((..........)))))))(....).. ( -14.40, z-score = -2.10, R) >droSim1.chrX_random 5534079 58 + 5698898 CAGAGCUGUUAGAUUCGGCAACACAAAAGCAGGAAAAAA--UGGAUUCCUGUCGGAGGAA ....((((.......)))).........(((((((....--....)))))))........ ( -12.30, z-score = -1.00, R) >droSec1.super_8 3677220 59 + 3762037 CGGAGCUGUUAGAUUCGGCAACACAAAAGCAGGAAAAAAA-UGGAUUCCUGUCGAAAGAA .(..((((.......))))..).......((((((.....-....))))))((....)). ( -12.80, z-score = -1.45, R) >consensus CAGAGCUGUUAGAUUCGGCAACACAAAAGCAGGAAAAAAA_UGGAUUCCUGUCGAAAGAA ....((((.......)))).........(((((((..........)))))))........ (-12.29 = -12.07 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:44 2011