| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,363,459 – 21,363,595 |
| Length | 136 |
| Max. P | 0.923785 |
| Location | 21,363,459 – 21,363,560 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 73.79 |
| Shannon entropy | 0.34550 |
| G+C content | 0.30376 |
| Mean single sequence MFE | -19.63 |
| Consensus MFE | -12.25 |
| Energy contribution | -12.70 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21363459 101 - 22422827 AAAUACUUUAAAUAGGGCGUCAAUAGAAACGCCGAGUUUCUCGGCAAUUGAAAAAUACCGAAAAUUCGGAUUAAGUAGCACUUAAUUACUUUAAAUUAUGU ..(((.((((((...(((((........)))))((((((.((((..(((....))).)))))))))).(((((((.....)))))))..)))))).))).. ( -23.20, z-score = -2.78, R) >droSim1.chrX 16497435 88 - 17042790 AAAUACUUUAAAGUGGGCGUCAAAUAUAACGUUAUAUUU-----------AAAAAUCCAGAAAAUUGGGAUUAGGUAG--CCAAUGCACUUUAAAUUAUGU ..(((.((((((((((((...(((((((....)))))))-----------...(((((.........))))).....)--))....))))))))).))).. ( -17.90, z-score = -2.04, R) >droSec1.super_8 3676428 87 - 3762037 AAAUACAUUAAAGUGGGCGUGAAAUAUAACGUUAUAUUU-----------AAAGAUCCAGAAAA-UGGGAUUAGGUAG--CCAAUGCACUUUAAGUUAUGU ..(((..(((((((((((...(((((((....)))))))-----------...(((((......-..))))).....)--))....))))))))..))).. ( -17.80, z-score = -1.91, R) >consensus AAAUACUUUAAAGUGGGCGUCAAAUAUAACGUUAUAUUU___________AAAAAUCCAGAAAAUUGGGAUUAGGUAG__CCAAUGCACUUUAAAUUAUGU ..(((.((((((((((((((........)))))....................(((((.........)))))..............))))))))).))).. (-12.25 = -12.70 + 0.45)
| Location | 21,363,498 – 21,363,595 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 50.85 |
| Shannon entropy | 0.66042 |
| G+C content | 0.29131 |
| Mean single sequence MFE | -15.80 |
| Consensus MFE | -5.73 |
| Energy contribution | -4.63 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.73 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807803 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21363498 97 - 22422827 AAAGAAAUUU-----AAAUCGUAUUUACAUAUGAAAUCUAAAAUACUUUAAAUAGGGCGUCAAUAGAAACGCCGAGUUUCUCGGCAAUUGAAAAAUACCGAA ...(((((((-----...((((((....)))))).....................(((((........))))))))))))((((..(((....))).)))). ( -20.00, z-score = -2.50, R) >droSec1.super_8 3676464 86 - 3762037 CAAGAAAUAU-----GUAUCAUAUUUACAUACGAAAUCUAAAAUACAUUAAAGUGGGCGUGAAAUAUAACGUUAUAUUU---AAAGAUCCAGAA-------- .......(((-----(((.......))))))......................(((((...(((((((....)))))))---...).))))...-------- ( -10.40, z-score = -0.47, R) >droYak2.chrX 20536764 94 - 21770863 AAAGAAUUAUCGCACAUACUAUAUGUGCGUAUAAAAAGAAAUAGAAUGUUAAAUGAGAGAAACGUUAAGUUCUCAGCAACUGAAAAGGCCAGAA-------- ......((((((((((((...)))))))).))))......................(((((.(.....)))))).....(((.......)))..-------- ( -17.00, z-score = -1.87, R) >consensus AAAGAAAUAU_____AUAUCAUAUUUACAUAUGAAAUCUAAAAUACUUUAAAAUGGGCGUAAAAUAAAACGCUAAGUUUCU_AAAAAUCCAGAA________ ..................((((((....)))))).....................(((((........)))))............................. ( -5.73 = -4.63 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:42 2011