| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,354,643 – 21,354,706 |
| Length | 63 |
| Max. P | 0.805122 |
| Location | 21,354,643 – 21,354,706 |
|---|---|
| Length | 63 |
| Sequences | 4 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 60.32 |
| Shannon entropy | 0.64208 |
| G+C content | 0.51534 |
| Mean single sequence MFE | -16.35 |
| Consensus MFE | -6.96 |
| Energy contribution | -9.27 |
| Covariance contribution | 2.31 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.805122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21354643 63 - 22422827 CGAGGCGUGUGCUUUGAUGAAAGGACGUGGGGAUGUGUGUGCUGUUGUAGCCGAGUCCUCAUA ((((((....))))))..........((((((((...((.((((...)))))).)))))))). ( -19.40, z-score = -1.69, R) >droYak2.chrX 20526831 63 - 21770863 CAAAGCUGGUGCUUUGAUGAAAGGACAUGGGGAUGUGUGCGCUGUUGUUGCCGAGUCCUCAUA ((((((....))))))..........((((((((.((.((((....).))))).)))))))). ( -20.40, z-score = -1.85, R) >droEre2.scaffold_4690 17873174 63 - 18748788 CGAGGCGGGCGCUUUGAUGAAAGGACGUGGGGAUGUGUGUGCUGUUGUUGCCGAGUCCUCAUA ((((((....))))))..........((((((((...((.((.......)))).)))))))). ( -19.50, z-score = -0.92, R) >droWil1.scaffold_181096 10963166 52 + 12416693 -CCAACAUCCACACCCACUGUACGACAUGGAUAUACAUUUACACGUACACAUG---------- -.................((((((..(((......))).....))))))....---------- ( -6.10, z-score = -0.69, R) >consensus CGAAGCGGGCGCUUUGAUGAAAGGACAUGGGGAUGUGUGUGCUGUUGUAGCCGAGUCCUCAUA ((((((....))))))..........((((((((.((.((.........)))).)))))))). ( -6.96 = -9.27 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:41 2011