| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,283,995 – 12,284,150 |
| Length | 155 |
| Max. P | 0.570937 |
| Location | 12,283,995 – 12,284,150 |
|---|---|
| Length | 155 |
| Sequences | 4 |
| Columns | 157 |
| Reading direction | forward |
| Mean pairwise identity | 75.52 |
| Shannon entropy | 0.38095 |
| G+C content | 0.35886 |
| Mean single sequence MFE | -32.50 |
| Consensus MFE | -15.25 |
| Energy contribution | -17.00 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570937 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12283995 155 + 23011544 UAUCCUUUUCCAUUUUGGCUUAUGCUAUUUAACAAGUAAAUAGACUGCAUUCUUGCCAUGUGCAACC-CGAAAACUUUUGCUAAUUUCUCUAUAAUGUGUAGUGAAUUAGACAGCUUGUUUUGAGACCCCUUUUUGGGGCUGAAAACAAAAACCCC- ............((((((......(((((((.....)))))))..(((((.........)))))..)-)))))....((((((((((..((((.....)))).))))))).))).(((((((.((.((((.....)))))).))))))).......- ( -36.30, z-score = -2.51, R) >droSim1.chr2L 12084006 140 + 22036055 UAUCCCUUUCCAUUUUGGUUUAUGUUAUUUAACAAGUAAAUAGACU--------------UGCAACC-CAUAAACUUCUGCUAAUUUCUCUAUAAUGUUUAGUGAAUUUAGCAGCUUGUUGU-AGAUCCCUUUUUCGGGCUGAAAACAAAAACCCC- ................(((((.((((......(((((......)))--------------))((.((-(...(((..(((((((.(((.(((.......))).))).)))))))...)))..-.((........))))).))..)))).)))))..- ( -31.90, z-score = -3.42, R) >droSec1.super_16 473866 141 + 1878335 UAUCCUUUCCCAUUUUGGUUUAUGUUAUUUAACAAGUAAAUAGACU--------------UGCAACC-CGAAAACUUUUGCUAAUUUCUCUAUAAUGUUUAGUGAAUUUAGCAGCUUGUUUU-AGAUCCCUUUUUGGGGCUGAAAACAAAAACCCCC ................(((((.((((.....((((((........(--------------((.....-))).......((((((.(((.(((.......))).))).))))))))))))(((-((.((((.....))))))))))))).)))))... ( -31.60, z-score = -2.63, R) >droYak2.chr2L 8714146 148 + 22324452 UCUGCUUUUCCUGUUUGACUAAUGCUAUUUCUCAAGUAAAUAGACAAC------GCUAACUACGUUGGCAUGCAAUUCCGCUAAUUUCUCUAUAAUGUUUUGCGAAUUUAGCAGCAUGUUU--AGACCCAUUCUGGGCAUUUUGGGCCGAAACUGC- ...((.((((..(((..(....(((((.(((.((((...(((((....------((((((...))))))..((......)).......))))).....)))).)))..)))))..((((((--(((.....))))))))).)..))).))))..))- ( -30.20, z-score = 0.28, R) >consensus UAUCCUUUUCCAUUUUGGCUUAUGCUAUUUAACAAGUAAAUAGACU______________UGCAACC_CAAAAACUUCUGCUAAUUUCUCUAUAAUGUUUAGUGAAUUUAGCAGCUUGUUUU_AGACCCCUUUUUGGGGCUGAAAACAAAAACCCC_ ........................(((((((.....)))))))..................................(((((((.(((.(((.......))).))).))))))).(((((((.((.((((.....)))))).)))))))........ (-15.25 = -17.00 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:44 2011