| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,354,301 – 21,354,393 |
| Length | 92 |
| Max. P | 0.788381 |
| Location | 21,354,301 – 21,354,393 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 77.29 |
| Shannon entropy | 0.31502 |
| G+C content | 0.40142 |
| Mean single sequence MFE | -24.10 |
| Consensus MFE | -16.28 |
| Energy contribution | -16.73 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.788381 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21354301 92 + 22422827 UUGUUAAAUGUCAUGUUAAUUCCCUC-GUAAUACGCGUGUUUAUUAUGUUAAACACUUAACAUGCGUGGGUGUGCGUGAGCGUGUGUGUGCGC ..........((((((.....(((.(-(((......(((((((......)))))))......)))).)))...))))))((((......)))) ( -26.20, z-score = -1.13, R) >droVir3.scaffold_13042 599270 82 - 5191987 UUGUUAACUGUCAUGUUAAUUCCUUC-GUAAUACGCGUAUUCAUUAUGUUAAAUACUUAGCAUG---GGCCAUGCGUCAGCUUUGC------- ..((((((......))))))......-((((...((((((...(((((((((....))))))))---)...)))))).....))))------- ( -15.90, z-score = -0.56, R) >droMoj3.scaffold_6359 3537519 87 - 4525533 UUGUUAACUGGCAUGUUAAUUCCUUCCGUAAUACGCGUGUUCAUUAUGUUAAACACUUAACAUG---GGACAUGCGUGUA-UUAGCGGUGG-- ..((((((......)))))).((..((((.((((((((((((..((((((((....))))))))---)))))))))))).-...)))).))-- ( -30.20, z-score = -3.86, R) >consensus UUGUUAACUGUCAUGUUAAUUCCUUC_GUAAUACGCGUGUUCAUUAUGUUAAACACUUAACAUG___GGACAUGCGUGAGCUUAGC_GUG___ ..((((((......))))))...........(((((((((((..((((((((....))))))))...)))))))))))............... (-16.28 = -16.73 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:40 2011