| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,346,278 – 21,346,370 |
| Length | 92 |
| Max. P | 0.799577 |
| Location | 21,346,278 – 21,346,370 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 68.80 |
| Shannon entropy | 0.53164 |
| G+C content | 0.54835 |
| Mean single sequence MFE | -26.75 |
| Consensus MFE | -13.96 |
| Energy contribution | -13.35 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.799577 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21346278 92 + 22422827 ------CCCCACGAACUUUCGCAGCGCGGCUGUCAUCAUCAACCUCAAAGCUCAUCCUCACCCGGCCAAUAAUUUAAAUGUUUUUCGGCUGGGGGCCA---- ------..((..((.((((.(((((...))))).............)))).)).......(((((((((.(((......))).)).)))))))))...---- ( -19.44, z-score = 0.62, R) >droPer1.super_53 461620 84 + 525408 -----------------GUCCCAUUCCCGAGGCCAGUGUCAUCAUCGAC-CUCAUCCCCGCCCAGCCAAUAAUUUAAAUGUUUUCGGAGUGGGUAAGGGACA -----------------(((((......((((.(.(((....))).).)-)))......(((((.((...(((......)))...))..)))))..))))). ( -27.00, z-score = -2.71, R) >dp4.chrXL_group1a 7814461 84 - 9151740 -----------------GUCCCAUUCCCGAGGCCAGUGUCAUCAUCGAC-CUCAUCCCCGCCCAGCCAAUAAUUUAAAUGUUUUCGGAGUGGGUAAGGGACA -----------------(((((......((((.(.(((....))).).)-)))......(((((.((...(((......)))...))..)))))..))))). ( -27.00, z-score = -2.71, R) >droEre2.scaffold_4690 17864744 98 + 18748788 UCCGCCCCCAUCGAACACUCGCCGCGCGGCUGUCAGCGGCGACCUCAAAACUCAUCCUCACCCGGCCAAUAAUUUAAGUGUUUUUCGGCUGGGGGCCC---- ...((((((((((((((((((((((..........))))))).............((......))............))))...)))).)))))))..---- ( -35.70, z-score = -2.28, R) >droYak2.chrX 20518778 93 + 21770863 -----GCCCCCUGAACAUUCGCGGCGUGGCUGUCAUCGGCAACCUCAAAACUCAUCCUCACCCGGCCAAUAAUUUAAAUGUUUUUCGGCUGGGGGCCC---- -----((((((..........(((.(((((((....))))..................))))))(((((.(((......))).)).))).))))))..---- ( -25.56, z-score = 0.03, R) >droSec1.super_8 3658055 91 + 3762037 -------CCGCCGAACUUUCGCAGCGCGGCUGUCAUCAGCAACCUCAAAACUCAUCCUCACCCGGCCAAUAAUUUAAAUGUUUUUCGGCUGGGGGCCA---- -------..(((((.....(((...)))((((....))))....))..............(((((((((.(((......))).)).))))))))))..---- ( -25.80, z-score = -1.16, R) >consensus _______CC__CGAAC_UUCGCAGCGCGGCUGUCAGCGGCAACCUCAAAACUCAUCCUCACCCGGCCAAUAAUUUAAAUGUUUUUCGGCUGGGGGCCA____ .......................((...((((....))))....................(((((((...(((......)))....))))))).))...... (-13.96 = -13.35 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:39 2011