| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,326,818 – 21,326,872 |
| Length | 54 |
| Max. P | 0.549408 |
| Location | 21,326,818 – 21,326,872 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 71.34 |
| Shannon entropy | 0.39614 |
| G+C content | 0.36162 |
| Mean single sequence MFE | -8.84 |
| Consensus MFE | -7.60 |
| Energy contribution | -6.83 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.56 |
| Mean z-score | -0.60 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549408 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21326818 54 - 22422827 CAAAGUGCACAGAGAAAAUUGUAAACGCAAUUUUCCAAAAUCUUUAUUAA-UGGU .((((......(.(((((((((....)))))))))).....)))).....-.... ( -7.90, z-score = -1.19, R) >droYak2.chrX 20505504 54 - 21770863 CCAAGUGCACAGAGAGAAUGGUAAAUGCAGUUUUUCCAAACCUUUUCUAU-UAGU ............((((((.(((.................)))))))))..-.... ( -5.13, z-score = 0.85, R) >droEre2.scaffold_4690 17852833 55 - 18748788 CGCAGUGCACAGAGAGAAUUGCAAAUGCAGUUCUUCAAGACUAACUCGAUGUAAU .....((((..(((((((((((....))))))))..........)))..)))).. ( -13.50, z-score = -1.46, R) >consensus CAAAGUGCACAGAGAGAAUUGUAAAUGCAGUUUUUCAAAACCUUUUCUAU_UAGU .............(((((((((....))))))))).................... ( -7.60 = -6.83 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:35 2011