| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,315,921 – 21,316,011 |
| Length | 90 |
| Max. P | 0.816453 |
| Location | 21,315,921 – 21,316,011 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 80.91 |
| Shannon entropy | 0.26470 |
| G+C content | 0.35413 |
| Mean single sequence MFE | -22.70 |
| Consensus MFE | -16.02 |
| Energy contribution | -17.13 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.816453 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21315921 90 - 22422827 AUUUUUUACAUUCUCCCACAGUUUUUAUUUAACCAAUUCCGGCCAAAAGCU---------------------------CAGUAUCAAGUAAAUAUGCCUGAGUAUUUUGGGUAUUGG ................................(((((...(.(((((((((---------------------------((((((.........))).)))))).)))))).)))))) ( -15.20, z-score = -0.87, R) >droSec1.super_8 3634951 117 - 3762037 AUUAUUUACAUUCUCCCACAGUUUUCAUUUAACCAAUUCUGCCCAAAAGCUCAAAAAAUUUCUGCUCGAGCAGAGCAACAGUAUCAAAUAAAUGUGCCUGAGUAUUUUGGGUAUUGG ................................(((((...(((((((((((((.......(((((....)))))(((.((............))))).))))).))))))))))))) ( -27.30, z-score = -2.80, R) >droSim1.chrX 16468249 117 - 17042790 AUUAUUUACAUUCUCCCACAGUUUUCAUUUAACCAAUUCUGCCCAAAAGCUCAAAAAAUUUCAGCUCGAGCAGAGCAACAGUAUCAAAUAAAUGUGCCUGAGUAUUUUGGGUAUUGG ................................(((((...(((((((((((((..........((((.....))))....(((.((......))))).))))).))))))))))))) ( -25.60, z-score = -2.41, R) >consensus AUUAUUUACAUUCUCCCACAGUUUUCAUUUAACCAAUUCUGCCCAAAAGCUCAAAAAAUUUC_GCUCGAGCAGAGCAACAGUAUCAAAUAAAUGUGCCUGAGUAUUUUGGGUAUUGG ................................(((((...(((((((((((((..........((((.....))))....((((.........)))).))))).))))))))))))) (-16.02 = -17.13 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:33 2011