| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,315,596 – 21,315,686 |
| Length | 90 |
| Max. P | 0.999140 |
| Location | 21,315,596 – 21,315,686 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 66.70 |
| Shannon entropy | 0.59384 |
| G+C content | 0.32800 |
| Mean single sequence MFE | -20.41 |
| Consensus MFE | -9.71 |
| Energy contribution | -10.99 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.47 |
| Mean z-score | -2.93 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.67 |
| SVM RNA-class probability | 0.999140 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21315596 90 - 22422827 AGUCCUUGUUUGGUUGAGUAUUUGCUAACAAUAAAUUAAUUCAUGUAAUUAUUCAACCAAGCACAAUAGUGAUUAAUUGGUAAAUAUCCG ((((((((((((((((((((.((((...................)))).))))))))))))))....)).))))....((.......)). ( -22.61, z-score = -3.93, R) >droEre2.scaffold_4690 17843409 85 - 18748788 ---CCUAAUUCGGUUGUCUAUUUGCUGCCAAUCAAUUAAUUCA--CAGUUAUUGAGCCAAGCACAAUGGGGAUUAAUUGGUAAAUAUCCG ---........(((.((......)).))).((((((((((((.--...((((((.((...)).))))))))))))))))))......... ( -17.10, z-score = -0.67, R) >droSec1.super_8 3634615 87 - 3762037 ---CCGUGUUUGGUUGAGUAUUUGCUAGUAAUAAAUUAAUUCGUGUAAUUAUUCAGCCAAGCACAAUAGUGAUAAAUUGGUAAAUAUCCG ---..(((((((((((((((.((((...................)))).)))))))))))))))..............((.......)). ( -25.21, z-score = -4.87, R) >droSim1.chrX 16467913 87 - 17042790 ---CCGUGUUUGGUUGAGUAUUUGCUAAUAAUAAAUUAAUUCAUGUAAUUAUUCAGCCAAGCACAAUAGUGAUUAAUUGGUAAAUACCCG ---..(((((((((((((((.((((...................)))).)))))))))))))))..............(((....))).. ( -25.81, z-score = -4.95, R) >dp4.chrXL_group1a 7779844 73 + 9151740 ------UAUAGGAUGACAAAACAAAUUUCAGUAGUUGAA------UAGUU-UUCCACCAUCCUCCACUGAGGAUUUCCAAUGAAUA---- ------....(((....(((((....(((((...)))))------..)))-)).....((((((....)))))).)))........---- ( -11.30, z-score = -0.23, R) >consensus ___CCGUGUUUGGUUGAGUAUUUGCUAACAAUAAAUUAAUUCAUGUAAUUAUUCAGCCAAGCACAAUAGUGAUUAAUUGGUAAAUAUCCG .......(((((((((((((.((((...................)))).)))))))))))))............................ ( -9.71 = -10.99 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:32 2011