Locus 15821

Sequence ID	dm3.chrX
Location	21,313,286 – 21,313,389
Length	103
Max. P	0.911128

overview

Window 1

Location	21,313,286 – 21,313,389
Length	103
Sequences	7
Columns	108
Reading direction	forward
Mean pairwise identity	55.17
Shannon entropy	0.89237
G+C content	0.35031
Mean single sequence MFE	-22.94
Consensus MFE	-3.14
Energy contribution	-4.54
Covariance contribution	1.39
Combinations/Pair	1.80
Mean z-score	-2.50
Structure conservation index	0.14
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.22
SVM RNA-class probability	0.911128
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 21313286 103 + 22422827
AAGCUGGAAUACAGGUAAAUCGAUUAAAGUCAAGUG-GUCGAU--UACC-AUAUUCUAGCCAUUCGAUAGUGCAGGAUUAUCGUAAUAACGGAAGCAAAGCGAAAAC-
..(((((((((..(((((.(((((((........))-))))))--))))-.)))))))))..((((....(((.......((((....))))..)))...))))...- ( -28.20, z-score =  -3.63, R)
>droSec1.super_8 3632365 104 + 3762037
AAGCUGGAAUACAGAUAAAUCGAUUACAGUAAAGUG-CUCGAU--UACCCAUAUUCCAGCGAUUCGAUAGUGCAGGAUUAUCGUAAUAAAGGAAGCAAAGCGAAAAC-
..(((((((((......((((((.(((......)))-.)))))--).....))))))))).((((((((((.....))))))).)))....................- ( -26.30, z-score =  -3.28, R)
>droYak2.chrX 20491757 104 + 21770863
AAGCCGGAAUGUAGGUAAAUCGAUUACUGUAGAGUU-GUCGAU--UACCAAUAUUCCAGCCAUUCGAUAGUGCAGGAUUAUCGUAAUAAAGGAAGCAAAGCGAAAAC-
..((.(((((((.(((((.(((((.(((....))).-))))))--)))).)))))))..((((((((((((.....))))))).)))...))..))...........- ( -29.80, z-score =  -3.99, R)
>droEre2.scaffold_4690 17840554 103 + 18748788
AAGCUGGAAUAUAUGUAAAUCGAUUACAGU-GAGUG-AUCGAU--UACCAAUAUUCGAGCCAUUCGACAGUGCAGGAUUAUCGUAAUAAAGGAAGCAAAGCGAAAAC-
..(((.((((((.((..((((((((((...-..)))-))))))--)..)))))))).)))..((((.(..(((....((((....)))).....)))..)))))...- ( -27.60, z-score =  -3.57, R)
>droPer1.super_53 423928 87 + 525408
CCACUGGAGUACAAUUCAAUUGAC-GGGGUAACUUC-AUAAUG--AAUUGAGAAUUAAGUAAUUGUACACAAAUUGUUAACGAAAACAAAU-----------------
..(((.((...(((((((..(((.-(......).))-)...))--)))))....)).))).............(((((......)))))..----------------- ( -10.80, z-score =   0.54, R)
>droWil1.scaffold_181096 10922637 99 - 12416693
AAAGCAAAAUAUAU-UCAAAUGUUUAAGAUAAUUACAAUAAUCGAUAUUGAUAUGUCGACAAAUCGAUUUGGUUAUCGUUACGUACUUAUUUGCCCAAAC--------
...(((((((((..-....)))).((((.((...((.((((((((.((((((.((....)).)))))))))))))).))....)))))))))))......-------- ( -15.90, z-score =  -0.85, R)
>droGri2.scaffold_14853 3913357 99 + 10151454
UAUUUUGAAUGCAUAUCGAUUGCUUCAAUUCAAUAGCAUCGUU--UUCCCAU---UAAGUUAU-CGAUAACGUAAUAUU-UGCCGAUAACUCGAU--AGGCAAUCAUU
.....(((.(((.((((((.((((..........)))).....--.......---...(((((-((.(((........)-)).))))))))))))--).))).))).. ( -22.00, z-score =  -2.69, R)
>consensus
AAGCUGGAAUACAGGUAAAUCGAUUAAAGUAAAGUG_AUCGAU__UACCAAUAUUCCAGCCAUUCGAUAGUGCAGGAUUAUCGUAAUAAAGGAAGCAAAGCGAAAAC_
..(((((((((.......((((((.............))))))........)))))))))................................................ ( -3.14 =  -4.54 +   1.39)

alignment

secondary structure

dotplot

Window 2

Location	21,313,286 – 21,313,389
Length	103
Sequences	7
Columns	108
Reading direction	reverse
Mean pairwise identity	55.17
Shannon entropy	0.89237
G+C content	0.35031
Mean single sequence MFE	-22.26
Consensus MFE	-1.71
Energy contribution	-3.26
Covariance contribution	1.56
Combinations/Pair	1.86
Mean z-score	-2.58
Structure conservation index	0.08
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.60
SVM RNA-class probability	0.757336
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 21313286 103 - 22422827
-GUUUUCGCUUUGCUUCCGUUAUUACGAUAAUCCUGCACUAUCGAAUGGCUAGAAUAU-GGUA--AUCGAC-CACUUGACUUUAAUCGAUUUACCUGUAUUCCAGCUU
-...((((...(((....(((((....)))))...)))....)))).((((.((((((-((((--(((((.-.............)))).))))).)))))).)))). ( -21.44, z-score =  -2.12, R)
>droSec1.super_8 3632365 104 - 3762037
-GUUUUCGCUUUGCUUCCUUUAUUACGAUAAUCCUGCACUAUCGAAUCGCUGGAAUAUGGGUA--AUCGAG-CACUUUACUGUAAUCGAUUUAUCUGUAUUCCAGCUU
-...((((...(((.....((((....))))....)))....))))..(((((((((((((((--(((((.-.((......))..)))).)))))))))))))))).. ( -32.30, z-score =  -5.38, R)
>droYak2.chrX 20491757 104 - 21770863
-GUUUUCGCUUUGCUUCCUUUAUUACGAUAAUCCUGCACUAUCGAAUGGCUGGAAUAUUGGUA--AUCGAC-AACUCUACAGUAAUCGAUUUACCUACAUUCCGGCUU
-...((((...(((.....((((....))))....)))....)))).(((((((((...((((--(((((.-.(((....)))..)))).)))))...))))))))). ( -27.10, z-score =  -4.06, R)
>droEre2.scaffold_4690 17840554 103 - 18748788
-GUUUUCGCUUUGCUUCCUUUAUUACGAUAAUCCUGCACUGUCGAAUGGCUCGAAUAUUGGUA--AUCGAU-CACUC-ACUGUAAUCGAUUUACAUAUAUUCCAGCUU
-...(((((..(((.....((((....))))....)))..).)))).((((.((((((((..(--((((((-.((..-...)).)))))))..)).)))))).)))). ( -24.60, z-score =  -3.44, R)
>droPer1.super_53 423928 87 - 525408
-----------------AUUUGUUUUCGUUAACAAUUUGUGUACAAUUACUUAAUUCUCAAUU--CAUUAU-GAAGUUACCCC-GUCAAUUGAAUUGUACUCCAGUGG
-----------------..(((((......)))))............((((.......(((((--((...(-((.(......)-.)))..)))))))......)))). (  -9.82, z-score =   0.19, R)
>droWil1.scaffold_181096 10922637 99 + 12416693
--------GUUUGGGCAAAUAAGUACGUAACGAUAACCAAAUCGAUUUGUCGACAUAUCAAUAUCGAUUAUUGUAAUUAUCUUAAACAUUUGA-AUAUAUUUUGCUUU
--------(((((((...((((.((((((((((((......((((....))))........))))).))).)))).)))))))))))......-.............. ( -14.44, z-score =  -0.07, R)
>droGri2.scaffold_14853 3913357 99 - 10151454
AAUGAUUGCCU--AUCGAGUUAUCGGCA-AAUAUUACGUUAUCG-AUAACUUA---AUGGGAA--AACGAUGCUAUUGAAUUGAAGCAAUCGAUAUGCAUUCAAAAUA
........(((--((..((((((((..(-(........))..))-))))))..---)))))..--...(((((((((((.(((...))))))))).)))))....... ( -26.10, z-score =  -3.17, R)
>consensus
_GUUUUCGCUUUGCUUCCUUUAUUACGAUAAUCCUGCACUAUCGAAUGGCUGGAAUAUCGGUA__AUCGAU_CACUUUACUGUAAUCGAUUUACAUGUAUUCCAGCUU
...............................................(((((((((.........(((((...............)))))........))))))))). ( -1.71 =  -3.26 +   1.56)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:31 2011