Locus 15820

Sequence ID	dm3.chrX
Location	21,310,808 – 21,310,955
Length	147
Max. P	0.786627

overview

Window 0

Location	21,310,808 – 21,310,955
Length	147
Sequences	11
Columns	167
Reading direction	forward
Mean pairwise identity	69.26
Shannon entropy	0.63530
G+C content	0.38772
Mean single sequence MFE	-35.29
Consensus MFE	-15.06
Energy contribution	-15.07
Covariance contribution	0.01
Combinations/Pair	1.32
Mean z-score	-1.29
Structure conservation index	0.43
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.69
SVM RNA-class probability	0.786627
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 21310808 147 + 22422827
-------UCUGUCCGCUUCAGCCAUUU--------CAUUGCAGUUUGGCU-UUG--UUCUCUUUGUUUUAUUGAAACAUCGAAGGAUUUAUAUGAUAUGGCGUUUUUAUUUAUGAUGCCAUUUCGUUGAUUAACACUCUUUGAUGCGCGACGCAAACAGGCAGGG--
-------((((((.((...(((((...--------(......)..)))))-..)--)......(((((..(((...((((((((..((((.((((.((((((((.........)))))))).))))....))).)..))))))))..)))...))))))))))).-- ( -36.60, z-score =  -1.06, R)
>droSim1.chrX_random 5524895 138 + 5698898
-------UCUGUCCGAUUCAGCCAUUU--------CAUUGCAGUUUGGCU-UUG--UUCUCUUUGUUUGAUUGAAACAUCGAAGGAUUUAUAUGAAAUGGCGUUUUUAUUUAUGAUGCCAUUUCGUUGAUUAACACUCUUUGAUGCGCGACGCAAA-----------
-------...(((((....(((((...--------(......)..)))))-...--....................((((((((..((((.(((((((((((((.........)))))))))))))....))).)..)))))))))).))).....----------- ( -34.70, z-score =  -1.57, R)
>droSec1.super_8 3629953 138 + 3762037
-------UCUGUCCGAUUCACCCAUUU--------CAUUGCAGUUUGGCU-UUG--UUCUCUUUGUUUGAUUGAAACAUCGAAGGAUUUAUAUGAAAUGGCGUUUUUAUUUAUGAUGCCAUUUCGUUGAUUAACACUCUUUGAUGCGCGACGCAAG-----------
-------...(((((..(((..((...--------((..((......)).-.))--.......))..)))......((((((((..((((.(((((((((((((.........)))))))))))))....))).)..)))))))))).))).....----------- ( -33.30, z-score =  -1.51, R)
>droYak2.chrX 20489133 150 + 21770863
------UUAUGCCCGCUUCUACCAUUU--------UAUUGCAGCUUGGCU-UUG--UUCUUUUUGUUUGAUUGAAACAUGGAAGGAUUUAUAUGAAAUGACGUUUUUAUUUAUGAUGCCAUUUCGUUGAUUAACAGUCUUUGAUGCGCGACGCAAAUCGUCGCAGUG
------.......((((..........--------....(((....((((-..(--((((((((((((.....))))).))))))))....((((((((.((((.........)))).))))))))........)))).....)))((((((.....)))))))))) ( -33.00, z-score =  -0.25, R)
>droEre2.scaffold_4690 17838210 150 + 18748788
------UCCUGUGCGCUUCAGCCAUUU--------CAUUGCAGUUUGGCU-UUG--UUCUUUUUGUUUGAUUGAAGCAUCGAAGGAUUUAUAUGAAAUGGCGUUUUUAUUUAUGAUGCCAUUUCGUUGAUUAACACUCUUUGAUGUGCGACGCAAAAAUUCGCAGUG
------..(((((.((...(((((...--------(......)..)))))-..)--)..((((((((((......(((((((((..((((.(((((((((((((.........)))))))))))))....))).)..))))))))).))).)))))))..))))).. ( -41.20, z-score =  -1.82, R)
>droAna3.scaffold_13117 2713788 118 - 5790199
---------------GCUGACCCCCUU--------UUUUGCUGUUUCGUCGUUGGCUUGUUUUUGUUUGAUUGAAACAUCUAAGGAUUUAUAUGAAAUGGUGUUUUUAUUUAUGAUGCCAUUUCGUUGAUUAACACUCUCU--------------------------
---------------........((((--------....(.((((((((((..(((........)))))).))))))).).))))......(((((((((((((.........)))))))))))))...............-------------------------- ( -23.50, z-score =  -1.83, R)
>dp4.chrXL_group1a 7770880 157 - 9151740
UCAUUCCGUUGUGCCGCUGAAUGGCUG--------CACCGCUGCACCGCUGUCCCGUUGCUUUUGUUUGAUUGAAACAUCGAAGGAUUUAUACGAAAUGGCGUUUUUAUUUAUGAGGCCAUUUCGUUGAUUAACACUCUUUGACGUGCAACGCAAACAAACGGAG--
....((((((((((.(((....))).)--------))).((......))(((..((((((...(((((.....)))))((((((..((((.((((((((((.((.........)).))))))))))....))).)..))))))...))))))...))))))))).-- ( -48.30, z-score =  -2.38, R)
>droPer1.super_53 420904 165 + 525408
UCAUUCCGUUGUGCCGCUGAAUGGCUGUAUGGCUGCACCGCUGCACCGCUGUCCCGUUGCUUUUGUUUGAUUGAAACAUCGAAGGAUUUAUACGAAAUGGCGUUUUUAUUUAUGAGGCCAUUUCGUUGAUUAACACUCUUUGACGUGCAACGCAAACAAACGGAG--
....((((((((((.((.(..(((((....)))))..).)).))))...(((..((((((...(((((.....)))))((((((..((((.((((((((((.((.........)).))))))))))....))).)..))))))...))))))...))))))))).-- ( -50.70, z-score =  -2.04, R)
>droWil1.scaffold_181096 10918331 145 - 12416693
-------CAAGUGCUCCUGUGUUGCGC--------CCCUGUAUUUUGGCC-UUG----UUUUUUGUUUGAUUGAAACAUCGAAGGAUUUAUAUGAAAUGGCGUUUUUAUUUAUGAGGCCAUUUCGUUGAUUAACUCUCUUUGACGUGCGUUGCAAAUGGAGAGCA--
-------...((.((((..(((.((((--------.((........))..-.((----((((..........))))))((((((((.(((.((((((((((.((.........)).))))))))))....))).)).))))))...)))).)))...)))).)).-- ( -40.40, z-score =  -2.20, R)
>droMoj3.scaffold_6359 833817 131 + 4525533
--------UCACUCCACUCACUCCUUCU-----CGC--UCUAUCUAAUU-GUUGUGCUGCUCCUGUUUGAUUGAAGUAUCAUAGGAUUUAUCUGAAAUUGUAUUUUUAUUUAUGAUGCCAUUUCGUUGAUUAACACUCUUUGACGUG--------------------
--------....................-----(((--((........(-((((....(((((((..((((......))))))))).......(((((.(((((.........))))).)))))))....)))))......)).)))-------------------- ( -16.54, z-score =   0.73, R)
>droGri2.scaffold_14853 3910950 151 + 10151454
--------UCUCGCCAAUCAUUAUCUUG-----CGCAGUCUGCCUAAAUAGUUGUGUUGCUCUUAUUUGUUAAAAACAUCACAGGAUUUAUGGGAAAUGGUAUUUUUAUUUAUGAUACCAUUUCGUUGAUUAACACUCUUUGAUGUCCAUUGCACAAUGCCAGC---
--------...................(-----(((((.(((......))))))))).(((..(((((((.....((((((.((((.......(((((((((((.........)))))))))))(((....)))..)))))))))).....))).))))..)))--- ( -30.00, z-score =  -0.23, R)
>consensus
_______UCUGUGCGACUCAGCCAUUU________CAUUGCAGUUUGGCU_UUG__UUCUUUUUGUUUGAUUGAAACAUCGAAGGAUUUAUAUGAAAUGGCGUUUUUAUUUAUGAUGCCAUUUCGUUGAUUAACACUCUUUGAUGUGCGACGCAAA____C_G____
...............................................................(((((.....)))))......((((...(((((((((((((.........))))))))))))).)))).................................... (-15.06 = -15.07 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:29 2011