| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,282,752 – 12,282,845 |
| Length | 93 |
| Max. P | 0.865212 |
| Location | 12,282,752 – 12,282,845 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 63.61 |
| Shannon entropy | 0.66265 |
| G+C content | 0.46393 |
| Mean single sequence MFE | -19.03 |
| Consensus MFE | -7.96 |
| Energy contribution | -7.38 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.865212 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12282752 93 - 23011544 -----GUAUCCUUCCAAGCGCUGCCUUUUCCAUCCAUAAGCCCCCAUUUGUGUUUGAUUUC-CGAUUGAACAU-------------CGCAC--------ACAUAUUUCUCACGCCUCGCU -----...........((((..(((((..........)))........(((((.(((((((-.....))).))-------------)).))--------)))..........))..)))) ( -12.10, z-score = -1.03, R) >droEre2.scaffold_4929 13506084 93 + 26641161 -----CUAUCCUUUCAGGCGGCGCAUUUUCCGUGCAUAAGCCCCCAUUUGUGUUUGAUUUU-CGAUUGAACAU-------------CGCAC--------ACAUAUUUCUAACGCCUCGCU -----..........(((((((((.......)))).............(((((.((((.((-(....))).))-------------)).))--------))).........))))).... ( -22.10, z-score = -2.16, R) >droYak2.chr2L 8712949 93 - 22324452 -----CUAUCCUUUCCGGCGGUGCAUUUUCCAUCCAUAAGCCCCCAUUUGUGUUUGAUUUU-CGAUUGAACAU-------------CGCAC--------ACAUAUUUCUCACGCCUCACU -----...........(((((.((...............)))).....(((((.((((.((-(....))).))-------------)).))--------)))..........)))..... ( -16.66, z-score = -1.83, R) >droSec1.super_16 472627 93 - 1878335 -----CUAUCCUUUCAGGCGCUGCAUUUUCCAUGCAUAAGCCCCCAUUUGUGUUUGAUUUC-CGAUUGAACAU-------------CGCAC--------ACAUAUUUCUCACGCCUCGCU -----..........(((((.(((((.....)))))............(((((.(((((((-.....))).))-------------)).))--------))).........))))).... ( -18.50, z-score = -1.89, R) >droSim1.chr2L 12082779 93 - 22036055 -----CUAUCCUUUCAGGCGCUGCAUUUUCCAUCCAAAAGCCCCCAUUUGUGUUUGAUUUC-CGAUUGAACAU-------------CGCAC--------ACAUAUUUCUCACGCCUCGCU -----..........(((((..((.((((......)))))).......(((((.(((((((-.....))).))-------------)).))--------))).........))))).... ( -15.00, z-score = -1.17, R) >dp4.chr4_group3 5851420 120 + 11692001 AAACACUUUCUCUUUGGGCGAUGUGUCGGUGCCACCGUAACCCCAAUUUAUAUUUUGUUCUGUGGCACAACACAGACACGUCCACGCACACACCGACAGACACAUUUCUCACGCCCCGCU ...............(((((...((((((((....(((.....(((........))).((((((......)))))).......)))....))))))))((........)).))))).... ( -32.00, z-score = -2.39, R) >droPer1.super_1 2955276 120 + 10282868 AAACACUUUCUCUUUGGGCGAUGUGACCGUGCCACCGUAACCCCAAUUUAUAUUUUGUUCUGUGGCACAACACAGACACGUCCACGCACACACCGACAGACACAUUUCUCACGCCCCGCU ...............(((((.((((...(((((((.(.(((...(((....)))..)))).)))))))..)))).....(((..((.......))...)))..........))))).... ( -27.20, z-score = -1.69, R) >droAna3.scaffold_12916 3068666 94 + 16180835 --------UACUCUUUAGUGUAAGCUUUUGUUUU----AGUUUUUUUUUUUGACCCGAUUU-CGAUGGAACAC-------------CGCACUCAUAUGUACAUAUUCCUCACGCCUCGCU --------........((((...((..(((..((----((.........))))..)))...-.((.((((...-------------.(((......))).....))))))..))..)))) ( -8.70, z-score = 1.19, R) >consensus _____CUAUCCUUUCAGGCGCUGCAUUUUCCAUCCAUAAGCCCCCAUUUGUGUUUGAUUUU_CGAUUGAACAU_____________CGCAC________ACAUAUUUCUCACGCCUCGCU ...............(((((..((...............)).........(((((((((....))))))))).......................................))))).... ( -7.96 = -7.38 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:43 2011