| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,278,103 – 21,278,209 |
| Length | 106 |
| Max. P | 0.938594 |
| Location | 21,278,103 – 21,278,209 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 66.28 |
| Shannon entropy | 0.54708 |
| G+C content | 0.38251 |
| Mean single sequence MFE | -25.11 |
| Consensus MFE | -9.69 |
| Energy contribution | -9.62 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.938594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21278103 106 + 22422827 GCAACCUCUGUUGCUCUCGUAAACAUUCGGUGAUUAAAUAAGCGAAAGUAGCUUGUGAUUAAUA-GUAACUUA----------UUUAUGGUUUCACCAA-GCACCUUUAAUCACCAUC-- (((((....)))))..............((((((((((...((....)).((((((((...(((-(.......----------.))))....))).)))-))...))))))))))...-- ( -29.80, z-score = -4.63, R) >droEre2.scaffold_4690 17806886 116 + 18748788 GCAGCGCCUGGCUUUCCCGUUAACAAUCGGUGAUUAAA-AAGCGAAAGCUGCUUGUAAUUAAUAAGUAACUUACGAGUACGUAUUUAUGGUGUCGGCAA-GCACCUUUAAUCAGUGUG-- ...((((.........(((........)))((((((((-.(((....)))((((((...((....((((..((((....)))).))))..))...))))-))...)))))))))))).-- ( -29.40, z-score = -0.78, R) >droYak2.chrX 20455922 114 + 21770863 UCAACCUCAGACUUCUCUGUAAACAAUUGGUAAUUAAAUACGUGAAUGCCGCUCGUUAUUAAUAGGUAACUUA------UGUAUUUAUGGUUUCAACAAAGCACCUUUAAUCGGUGAAUG ..((((.((((....))))...............(((((((((((.((((..............))))..)))------)))))))).)))).........((((.......)))).... ( -20.74, z-score = -0.86, R) >droSec1.super_8 3592256 83 + 3762037 -----------------------CAUUCGGUGAUUAAAUAAGCGAAAGCAGCUUGUGAUUAACA-GUAACUUA----------UUUACGGCUUCGCCAA-GCACCUUUAAUCAACACC-- -----------------------.....(.((((((((...((....)).((((((((......-((((....----------.))))....))).)))-))...)))))))).)...-- ( -20.50, z-score = -2.90, R) >consensus GCAACCUCUG_CUUUCCCGUAAACAAUCGGUGAUUAAAUAAGCGAAAGCAGCUUGUGAUUAAUA_GUAACUUA__________UUUAUGGUUUCACCAA_GCACCUUUAAUCAGCAUC__ ............................(.((((((((...((....)).((((((.....))))))......................................)))))))).)..... ( -9.69 = -9.62 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:27 2011