| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,277,575 – 21,277,634 |
| Length | 59 |
| Max. P | 0.894652 |
| Location | 21,277,575 – 21,277,634 |
|---|---|
| Length | 59 |
| Sequences | 4 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 76.14 |
| Shannon entropy | 0.38737 |
| G+C content | 0.39299 |
| Mean single sequence MFE | -12.06 |
| Consensus MFE | -9.26 |
| Energy contribution | -9.95 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894652 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21277575 59 + 22422827 GCACUU-AAAACUGUCCACUGGAUGGACCCAUUUUCGAAAGUGCACUUAUGUAUAUAUCU---- ((((((-((((..(((((.....)))))...))))...))))))................---- ( -12.40, z-score = -2.07, R) >droEre2.scaffold_4690 17806412 59 + 18748788 GCACUU-GAAACUGUCCACUGAAAGAGC--AUUUUGGAAAGUGCACUUAAACUUGUAUAUCU-- ((((((-.(((.((..(.......)..)--).)))...))))))..................-- ( -9.20, z-score = -0.20, R) >droYak2.chrX 20455412 63 + 21770863 GCACUU-CAUACUGUCCGCUGGAAGGAGCGAUUUUCGAAAGUGCACUUAUAUGUACAUAUAUCU ((((((-......(((.(((......))))))......))))))...(((((....)))))... ( -12.90, z-score = -0.81, R) >droSec1.super_8 3591759 58 + 3762037 GCACUUUAAAACUGUCCACUGGAUGGACCCAUUUUCGAAAGUGCACUUAUAUAUAGCU------ (((((((......(((((.....))))).........)))))))..............------ ( -13.76, z-score = -2.76, R) >consensus GCACUU_AAAACUGUCCACUGGAAGGACCCAUUUUCGAAAGUGCACUUAUAUAUAUAUAU____ ((((((.((((..((((.......))))...))))...)))))).................... ( -9.26 = -9.95 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:27 2011