| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,277,330 – 21,277,444 |
| Length | 114 |
| Max. P | 0.779675 |
| Location | 21,277,330 – 21,277,444 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 64.69 |
| Shannon entropy | 0.48475 |
| G+C content | 0.48938 |
| Mean single sequence MFE | -29.87 |
| Consensus MFE | -21.43 |
| Energy contribution | -20.00 |
| Covariance contribution | -1.43 |
| Combinations/Pair | 1.42 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.779675 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21277330 114 - 22422827 UAGCACUCUUAGCCAAUGCUGGAAAUGCUGGAGAAACAAUACCCGAAGAACUUCCUCCCAGUUCCAUUGAUUUUCGAUCAGUGUACUUUUGGCACGAGUGCACAUGUGCUCGAU (((((.(..((((....))))..).)))))............((((((((((.......)))))((((((((...))))))))....)))))..((((..(....)..)))).. ( -29.60, z-score = -1.29, R) >droSec1.super_8 3591507 109 - 3762037 -AGAACUC--AGCCAAUGCUAGAAAUGCUGA--CAACAAUACCCGAGGAACUUGCUCCCAGUUCGACUGAUUUUCGCUCAGUGUACUUCUGGCACGAGUGCACAUGUGCUCGAU -.......--......(((((((((((((((--(............(((......)))(((.....)))......).)))))))..))))))))((((..(....)..)))).. ( -29.80, z-score = -1.14, R) >droEre2.scaffold_4690 17806200 97 - 18748788 ------------CAUAACUUAGCUAAACUUG---GCCAACGCAGGGAGACAGCCAUGGCUUGCCAACUGGUUUUCGCUCAGUGUACGCU--GCUCGAGUGCACAUGUGCUCGAA ------------..................(---((..((((.(((.((.((((((((....)))..))))).)).))).))))..)))--..(((((..(....)..))))). ( -30.20, z-score = -0.26, R) >consensus _AG_ACUC__AGCCAAUGCUAGAAAUGCUGG___AACAAUACCCGAAGAACUUCCUCCCAGUUCAACUGAUUUUCGCUCAGUGUACUUUUGGCACGAGUGCACAUGUGCUCGAU ................((((((((.(((...................(((((.......))))).(((((.......)))))))).))))))))((((..(....)..)))).. (-21.43 = -20.00 + -1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:26 2011