| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,264,157 – 21,264,248 |
| Length | 91 |
| Max. P | 0.557829 |
| Location | 21,264,157 – 21,264,248 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 81.03 |
| Shannon entropy | 0.24219 |
| G+C content | 0.35356 |
| Mean single sequence MFE | -7.77 |
| Consensus MFE | -6.93 |
| Energy contribution | -6.93 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21264157 91 - 22422827 ACAUUAAAUUCCAAUGCAAUUAUGCAUUUCGUUCUCAGUGUACCUACCAGUGUCCCAGUGUCCCUGUGUCCCAGUUAAAAUAUUAACUUCU (((((.......((((((....))))))........)))))........(.(..((((.....))).)..))((((((....))))))... ( -9.46, z-score = -0.92, R) >droSim1.chrX 16401467 71 - 17042790 ACAUUAAAUUUCCAUGCAAUUAUGCAUUUCGUUCUCAGUGUA--------------------CCAGUGUCCCAGUUAAAACAUUAACUUCU (((((........(((((....))))).........))))).--------------------..........((((((....))))))... ( -6.93, z-score = -1.04, R) >droSec1.super_8 3573808 71 - 3762037 ACAUUAAAUUUCCAUGCAAUUAUGCAUUUCGUUCUCAGUGUA--------------------CCAGUGUCCCAGUUAAAACAUUAACUUCU (((((........(((((....))))).........))))).--------------------..........((((((....))))))... ( -6.93, z-score = -1.04, R) >consensus ACAUUAAAUUUCCAUGCAAUUAUGCAUUUCGUUCUCAGUGUA____________________CCAGUGUCCCAGUUAAAACAUUAACUUCU (((((........(((((....))))).........)))))...............................((((((....))))))... ( -6.93 = -6.93 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:23 2011