| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,243,214 – 21,243,264 |
| Length | 50 |
| Max. P | 0.527416 |
| Location | 21,243,214 – 21,243,264 |
|---|---|
| Length | 50 |
| Sequences | 10 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 92.62 |
| Shannon entropy | 0.16344 |
| G+C content | 0.61200 |
| Mean single sequence MFE | -18.37 |
| Consensus MFE | -17.36 |
| Energy contribution | -17.21 |
| Covariance contribution | -0.15 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527416 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21243214 50 - 22422827 GCUAGUUGGACUUGGUCAGCUCAGUGCGGUUGGCGGCCACUUCGGCCAGA (((((..(.(((.((....)).))).)..)))))((((.....))))... ( -20.60, z-score = -1.41, R) >droSim1.chrX 16379003 50 - 17042790 GCUAGUUGGACUUGGUCAGCUCAAUGCGGUUGGCGGCCACUUCGGCCAGA (((((..(.(.((((.....))))).)..)))))((((.....))))... ( -15.80, z-score = -0.06, R) >droSec1.super_8 3551179 50 - 3762037 GCUAGUUGGACUUGGUCAGCUCAGUGCGGUUGGCGGCCACUUCGGCCAGA (((((..(.(((.((....)).))).)..)))))((((.....))))... ( -20.60, z-score = -1.41, R) >droYak2.chrX 20422299 50 - 21770863 GCUAGUUGGACUUGGUCAGCUCAGUGCGGUUGGCGGCCACUUCGGCCAGA (((((..(.(((.((....)).))).)..)))))((((.....))))... ( -20.60, z-score = -1.41, R) >droEre2.scaffold_4690 17773805 50 - 18748788 GCUAGUUGGACUUGGUCAGCUCAGUGCGGUUGGCGGCCACUUCGGCCAGA (((((..(.(((.((....)).))).)..)))))((((.....))))... ( -20.60, z-score = -1.41, R) >dp4.chrXL_group1a 7685950 50 + 9151740 GUUAGUUGGACUUGGUCAGCUCAGUGCGGUUGGCGGCUACUUCGGCCAGA (((((..(.(((.((....)).))).)..)))))((((.....))))... ( -15.70, z-score = -0.42, R) >droPer1.super_499 11167 50 + 13571 GUUAGUUGGACUUGGUCAGCUCAGUGCGGUUGGCGGCUACUUCGGCCAGA (((((..(.(((.((....)).))).)..)))))((((.....))))... ( -15.70, z-score = -0.42, R) >droVir3.scaffold_13042 4333346 50 - 5191987 GCUAGUUGGACUUGGUCAGCUCGGUGCGAUUGGCGGCCACCUCGGCGAGA ((((((((.(((.((....)).))).)))))))).(((.....))).... ( -19.50, z-score = -0.90, R) >droMoj3.scaffold_6359 2425238 50 + 4525533 GCUAGUUGGUUUUGGUCAGCUCUGUGCGAUGGGCGGCCACUUCGGCCAGG .((.(((((...(((((.((((........)))))))))..))))).)). ( -16.80, z-score = -0.34, R) >droGri2.scaffold_14853 7189944 50 - 10151454 CCUAGUUGGACUUGGAGAGCUCGGUGCGAUUGGCGGCCACUUCGGCCAGA .(((((((.(((.((....)).))).))))))).((((.....))))... ( -17.80, z-score = -0.73, R) >consensus GCUAGUUGGACUUGGUCAGCUCAGUGCGGUUGGCGGCCACUUCGGCCAGA ((((((((.(((.((....)).))).))))))))((((.....))))... (-17.36 = -17.21 + -0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:22 2011