| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,240,579 – 21,240,673 |
| Length | 94 |
| Max. P | 0.946848 |
| Location | 21,240,579 – 21,240,673 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 80.52 |
| Shannon entropy | 0.35421 |
| G+C content | 0.39246 |
| Mean single sequence MFE | -26.35 |
| Consensus MFE | -16.90 |
| Energy contribution | -16.33 |
| Covariance contribution | -0.57 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.946848 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21240579 94 - 22422827 ACAAAUGCA-AGAAAAUGGCGCUGCCAGUGUGUCUGGAAAAUAA--AAAAAAACUAAUUGGCAGCUCUGGUUUUUGCGAUAUUGAGUUGUUUACAAA .....((((-((((...((.(((((((((...............--..........))))))))).))..))))))))................... ( -23.01, z-score = -1.49, R) >droPer1.super_53 330373 95 - 525408 ACAAAUAUGCACAGAGCGGGGCUGCCAAUAUGCUUGAAAAUCGAUCGUUGACAGGACUUGGCAGCCCUG--UUAAACAAUAUUGAGUUGUUUACAAU ..............((((((((((((((....((((..(((.....)))..))))..))))))))))))--))(((((((.....)))))))..... ( -32.70, z-score = -3.92, R) >dp4.chrXL_group1a 7683268 95 + 9151740 ACAAAUAUGCACAGAGCGGGGCUGCCAAUAUGCUUGAAAAUCAAUCGUUGACAGGACUUGGCAGCCCUG--UUAAACAAUAUUGAGUUGUUUACAAU ..............((((((((((((((....((((..(((.....)))..))))..))))))))))))--))(((((((.....)))))))..... ( -32.70, z-score = -3.96, R) >droEre2.scaffold_4690 17771177 91 - 18748788 ACAAAUGCA-AGAAAACGGCGCUGCCAGUGUGGCUGGAAAAUA-----AAAAACUAAUUGGCAGCUCUGGAUUUUGCGAUAUUGAGUUGUUUACAAA .....((((-(((...(((.(((((((((.(((..........-----.....)))))))))))).)))..)))))))................... ( -24.66, z-score = -1.88, R) >droYak2.chrX 20419667 90 - 21770863 ACAAAUGCA-AGAAAACGGCGCUGCCAGUGUGGCUGGAAAAU------GAAAACUAAUUGGCAGCUCUGGUUUUUGCGAUAUUGAGUUGUUUACAAA .....((((-((((..(((.(((((((((((..(........------)...))..))))))))).))).))))))))................... ( -25.10, z-score = -1.55, R) >droSec1.super_8 3548447 91 - 3762037 ACAAAUGCA-AGAAAAUGGCGCUGCCAGUGUGUCUGGAAAAUA-----AAAAACUAAUUGGCAGCUCUGGUUUUUGCGAUAUUGAGUUGUUUACAAA .....((((-((((...((.(((((((((..............-----........))))))))).))..))))))))................... ( -23.15, z-score = -1.48, R) >droSim1.chrX 16376271 91 - 17042790 ACAAAUGCA-AGAAAAUGGCGCUGCCAGUGUGUCUGGAAAAUA-----AAAAACUAAUUGGCAGCUCUGGUUUUUGCGAUAUUGAGUUGUUUACAAA .....((((-((((...((.(((((((((..............-----........))))))))).))..))))))))................... ( -23.15, z-score = -1.48, R) >consensus ACAAAUGCA_AGAAAACGGCGCUGCCAGUGUGUCUGGAAAAUA_____AAAAACUAAUUGGCAGCUCUGGUUUUUGCGAUAUUGAGUUGUUUACAAA ................(((.(((((((((...........................))))))))).)))......(((((.....)))))....... (-16.90 = -16.33 + -0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:21 2011