| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,263,538 – 12,263,590 |
| Length | 52 |
| Max. P | 0.650832 |
| Location | 12,263,538 – 12,263,590 |
|---|---|
| Length | 52 |
| Sequences | 6 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 76.36 |
| Shannon entropy | 0.40235 |
| G+C content | 0.43071 |
| Mean single sequence MFE | -10.73 |
| Consensus MFE | -6.53 |
| Energy contribution | -6.31 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12263538 52 + 23011544 UUAAAAUAUGGUCAUCUUCG---UUGCCCCUGGCUGUUGGCCA-AUUUAUGUCUCG------- ........((((((.(....---..(((...))).).))))))-............------- ( -8.80, z-score = -0.80, R) >droSim1.chr2L 12064894 51 + 22036055 UUAAAAUAUGGUCAUCUUC----GUGCCCCUGGCUGUUGGCCA-AUUUAUGUCUCG------- ........((((((....(----(.(((...))))).))))))-............------- ( -10.20, z-score = -1.47, R) >droSec1.super_16 453713 51 + 1878335 UUAAAAUAUGGUCAUCUUC----GUGCCCCUGGCUGUUGGCCA-AUUUAUGUCUCG------- ........((((((....(----(.(((...))))).))))))-............------- ( -10.20, z-score = -1.47, R) >droYak2.chr2L 8693032 51 + 22324452 UUAAAAUAUGGUCAUCUUU----UUGCCGCUGGCUGUUGGCCA-AUUUAUGUCUCG------- ........((((((.(...----..(((...))).).))))))-............------- ( -9.50, z-score = -1.03, R) >droEre2.scaffold_4929 13486985 51 - 26641161 UUAAAAUAUGGUCAUCUUC----UUGCCCCUGGCUGUUGGCCA-AUUUAUGUCUCG------- ........((((((.(...----..(((...))).).))))))-............------- ( -9.50, z-score = -1.45, R) >droWil1.scaffold_180708 9953926 63 + 12563649 UUAAAAUAUGCUUUGCCUGGAGCCAGAAGCAGACUAAAGGACACGUUUAAAAAACCUGUCCUA ........(((((...(((....))))))))......((((((.(((.....))).)))))). ( -16.20, z-score = -2.70, R) >consensus UUAAAAUAUGGUCAUCUUC____UUGCCCCUGGCUGUUGGCCA_AUUUAUGUCUCG_______ ...((((.((((((...........((.....))...)))))).))))............... ( -6.53 = -6.31 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:42 2011