| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,220,883 – 21,220,981 |
| Length | 98 |
| Max. P | 0.973365 |
| Location | 21,220,883 – 21,220,981 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 73.35 |
| Shannon entropy | 0.44600 |
| G+C content | 0.33152 |
| Mean single sequence MFE | -23.48 |
| Consensus MFE | -12.96 |
| Energy contribution | -13.04 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.973365 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21220883 98 - 22422827 ------AACUUGAGU-----UAAAUUUUAAACAAAUAGAAGCACUUCAUUGAUACUUACUGUAUGUGGAACGAAAAUACCAGAUUU--UGGUAUUUACACAGCUUGGGUAU ------.(((..(((-----(.......................(((((..((((.....)))))))))..(.(((((((((...)--)))))))).)..))))..))).. ( -19.80, z-score = -1.79, R) >droEre2.scaffold_4690 17751768 101 - 18748788 -----GUUUUUGAAC-----UGAGCCUUAAAGAAAUUAAAGUACCUCAUAGGUGUUUACUGUAUCGGUAACGAAAAUACCGCACUCAGUAUUAUUAACAUGGUUUGGGUAU -----.........(-----..((((...............((((.....))))..(((((...(((((.......)))))....)))))..........))))..).... ( -20.80, z-score = -0.71, R) >droYak2.chrX 20398745 106 - 21770863 AAAUCAUAUUUGAGC-----AUAACUUUUAACAAAUAGAAGUAUCUCAUAGGUGUUUACUGUAUUUGAAACGAAAAUACCACAUUCGGUAUUAUUAACACGGCUUGUAAAU ....(((...((((.-----(((.((((((.....)))))))))))))...)))(((((.((...((....((.((((((......)))))).))..))..))..))))). ( -16.70, z-score = -0.80, R) >droSec1.super_8 3528256 105 - 3762037 ------GACUUAAGUAAUAACGCAUUGACAAGAAAUAGAAGCACUUCAUUGGUGCUUACUGUAUGUGGAACGAAAAUACCAGAUUCGGUAUUAAUUAAACGGCUUGGGUAU ------.((((((((.....(((((.........(((((((((((.....))))))).))))))))).......((((((......)))))).........)))))))).. ( -27.50, z-score = -3.25, R) >droSim1.chrX 16355103 100 - 17042790 ------GACUUAAGU-----UGCGUUUUAAAGAAAUAGAAGCACUUCAUUGGUGCUUACUGUAUGUGGAACGAAAAUACCAGAUUCGGUAUUAAUUAAACGGCUUGGGUAU ------.((((((((-----(((((((((.....(((((((((((.....))))))).))))...)))))))..((((((......)))))).......)))))))))).. ( -32.60, z-score = -4.97, R) >consensus ______GACUUGAGU_____UGAAUUUUAAAGAAAUAGAAGCACUUCAUUGGUGCUUACUGUAUGUGGAACGAAAAUACCAGAUUCGGUAUUAUUUACACGGCUUGGGUAU .......((((((((...................(((((((((((.....))))))).))))............((((((......)))))).........)))))))).. (-12.96 = -13.04 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:18 2011