Locus 15807

Sequence ID dm3.chrX
Location 21,218,431 – 21,218,529
Length 98
Max. P 0.979004
window21785

overview

Window 5

Location 21,218,431 – 21,218,529
Length 98
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 73.58
Shannon entropy 0.42625
G+C content 0.37389
Mean single sequence MFE -20.12
Consensus MFE -13.71
Energy contribution -13.78
Covariance contribution 0.06
Combinations/Pair 1.07
Mean z-score -2.05
Structure conservation index 0.68
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.01
SVM RNA-class probability 0.979004
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 21218431 98 + 22422827
GCAGCCUUCUCAUAGGACUCGCCUUGAACUAAAAGGCAGAGAUGCAAACGUACAUUAAUAUCGUGAACAUAUUCUUGUAAAUCCAUAUGUAUGUUUCU
(((.(((......))).((((((((.......))))).))).)))((((((((((.......((..(((......)))..))....)))))))))).. ( -23.50, z-score =  -2.38, R)
>droSim1.chrX 16352656 90 + 17042790
GCAGCCUUCUCAUAGGACUCGCCUUGAACUAAAAGGCAGAGAUGCAAACGUACAUUUAUAUCGUGAAUAUAUUCUUCCGAAUAUGUUUCU--------
(((.(((......))).((((((((.......))))).))).)))...................((((((((((....))))))))))..-------- ( -22.20, z-score =  -2.52, R)
>droSec1.super_8 3525790 90 + 3762037
GCAGCCUUCUCAUAGGACUCGCCUUGAACUAAAAGGCAGAGAUGCAGACGUACAUUUAUAUCGUGAAUAUAUUCUUCCGAAUAUAUUUUU--------
(((.(((......))).((((((((.......))))).))).))).((..((....))..))..((((((((((....))))))))))..-------- ( -22.30, z-score =  -2.63, R)
>droEre2.scaffold_4690 17749379 74 + 18748788
GCCGCCUUCUCAUAGGAUUCGCCUUGAACUGAAAGGCAGAGAUGCAGAUUAAAAUGUAUAUUAAAAUAAAAAUA------------------------
...(((((.(((.(((.....))).....))))))))....(((((........)))))...............------------------------ ( -12.50, z-score =  -0.68, R)
>consensus
GCAGCCUUCUCAUAGGACUCGCCUUGAACUAAAAGGCAGAGAUGCAAACGUACAUUUAUAUCGUGAAUAUAUUCUUCCGAAUAUAUUU_U________
(((.(((......))).((((((((.......))))).))).)))..................................................... (-13.71 = -13.78 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:17 2011