| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,210,730 – 21,210,821 |
| Length | 91 |
| Max. P | 0.698254 |
| Location | 21,210,730 – 21,210,821 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 75.76 |
| Shannon entropy | 0.44961 |
| G+C content | 0.51603 |
| Mean single sequence MFE | -31.68 |
| Consensus MFE | -21.52 |
| Energy contribution | -21.88 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.698254 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21210730 91 + 22422827 UGUGGCCAGUUCCGGCAACUGCAUACGAAGGUGCGACCAU-------GCCGUUUGCUCGGGUGAGCGGUGAACGGUCACCACUU------AGUCUUCUUUUUUU--- .((((((.(((((((((..(((((......)))))....)-------)))).((((((....)))))).)))))))))).....------..............--- ( -29.50, z-score = -0.59, R) >droAna3.scaffold_13248 738146 107 + 4840945 UGUGACCAGAGUGAGACGCUCCAUACAAAGUGGCGAACAAAUAUGUGAGAAUUUAUAUGGAGAUGUGACGAACGGUCACCGCUCGCAAAGAGCGCAAUUUUUUUUUU .((((((.(..((..((((((((((.(((....(..(((....)))..)..))).))))))).)))..))..)))))))(((((.....)))))............. ( -30.40, z-score = -2.38, R) >droEre2.scaffold_4690 17741320 98 + 18748788 UGUGCCCAGAUCCGGCAACUGCAUACAAAGGUGCGACCAGCAGUCUAGCCGUUUGC-UGGGGGAGCGGCGAACGGUCACCAGCU------ACUCUUCUUUUUUUU-- ....((((((..((((....((((......))))(((.....)))..))))..).)-))))((((..((............)).------.))))..........-- ( -29.90, z-score = 0.19, R) >droYak2.chrX 20388311 98 + 21770863 UGUGACCAGUUCCGGCAACUGCAUACUA-GGUGCGACCAGAAGGCAAGCCGUUUGCUUGGGGGAGCGGUGAACGGUCACCAGCU------ACUCUUCUUUUUUUU-- .((((((.(((((.((...(((((....-.))))).((...(((((((...)))))))...)).)).).)))))))))).....------...............-- ( -30.30, z-score = -0.06, R) >droSec1.super_8 3517919 98 + 3762037 UGUGGCCAGUUCCGGCAACUGCAUACAAAGGUGCGACCAGAAGUAAAGCCGUUUGCCUGGGUGAGCGGCGAACGGUCACCAGUU------AGUCUUCUUUUUUU--- .((((((.((((.((....(((((......))))).)).........((((((..(....)..)))))))))))))))).....------..............--- ( -33.10, z-score = -1.24, R) >droSim1.chrX_random 5516854 97 + 5698898 UGUGGCC-GUUCCGGCAACUGCAUACAAAGGUGCGACCAGAAGUAAAGCCGUUUGCCUGGGUGAGCGGCGAACGGUCACCAGUU------AGUCUUCUUUUUUU--- .((((((-((((.((....(((((......))))).)).........((((((..(....)..)))))))))))))))).....------..............--- ( -36.90, z-score = -2.34, R) >consensus UGUGGCCAGUUCCGGCAACUGCAUACAAAGGUGCGACCAGAAGUAAAGCCGUUUGCCUGGGGGAGCGGCGAACGGUCACCAGUU______AGUCUUCUUUUUUU___ .((((((.((((..(((.((........)).))).............((((((..(....)..))))))))))))))))............................ (-21.52 = -21.88 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:16 2011