| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,195,008 – 21,195,101 |
| Length | 93 |
| Max. P | 0.671384 |
| Location | 21,195,008 – 21,195,101 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.19 |
| Shannon entropy | 0.29904 |
| G+C content | 0.46056 |
| Mean single sequence MFE | -28.83 |
| Consensus MFE | -21.56 |
| Energy contribution | -23.24 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671384 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21195008 93 + 22422827 UUAUUCGAUACUAUCGCACUUUCGCAGCAUCGAUGAGUUUUCCGCAACUAUCGAUGGCUGUGUAGUAUGACCGUGCGGUGCUGUCUUCAAAAU--------------------------- ......((((.((((((((...((((((((((((.((((......)))))))))).))))))..(......))))))))).))))........--------------------------- ( -30.30, z-score = -2.69, R) >droEre2.scaffold_4690 17725551 119 + 18748788 UUAUUCGAUACUAUCGCGCAUUCGCAGCAUCGAUGA-UUUUCCGCAACUAUCGGCCUCUGCUUAGAAGGACCGUGCGCGGGUGGCUUCAAGAUACCGAAAUCGAUUUUCAUUCUCACCCU ....(((((......((.(((((((.((((.((((.-((......)).))))(((((((....)).))).)))))))))))))))(((........))))))))................ ( -26.60, z-score = 0.81, R) >droSec1.super_8 3502164 93 + 3762037 UUAUUCGAUACUAUCGCAGUUUCGCAGCAUCGAUGAGUUUUCCGCAACUAUCGAUGGCUGUGUAGUAUGACCGUGCGGUGCUGUCUUCAAAAU--------------------------- ......((((.((((((((((.((((((((((((.((((......)))))))))).))))))......)))..))))))).))))........--------------------------- ( -29.20, z-score = -2.09, R) >droSim1.chrX_random 5490154 93 + 5698898 UUAUUCGAUACUAUCGCAGUUUCGCAGCAUCGAUGAGUUUUCCGCAACUAUCGAUGGCUGUGUAGUAUGACCGUGCGGUGCUGUCUUCAAAAU--------------------------- ......((((.((((((((((.((((((((((((.((((......)))))))))).))))))......)))..))))))).))))........--------------------------- ( -29.20, z-score = -2.09, R) >consensus UUAUUCGAUACUAUCGCACUUUCGCAGCAUCGAUGAGUUUUCCGCAACUAUCGAUGGCUGUGUAGUAUGACCGUGCGGUGCUGUCUUCAAAAU___________________________ ......((((.((((((((...((((((((((((.((((......)))))))))).))))))..........)))))))).))))................................... (-21.56 = -23.24 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:15 2011