| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,153,086 – 21,153,185 |
| Length | 99 |
| Max. P | 0.610248 |
| Location | 21,153,086 – 21,153,185 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 88.03 |
| Shannon entropy | 0.16695 |
| G+C content | 0.32682 |
| Mean single sequence MFE | -18.07 |
| Consensus MFE | -13.41 |
| Energy contribution | -13.63 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.610248 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21153086 99 + 22422827 GAUCACUCUGCUGACGGUAUCUUUUUUAUACCCUAUAUGAGGGAUUCAUAAAUAUGGUUUCCCUUAUUUUUUCAGAAGCUUUUAAC----UUUUGGUUUGCUG .........((.((((((((.......)))))....((((((((.((((....))))..)))))))).....((((((.......)----)))))))).)).. ( -21.60, z-score = -2.27, R) >droSec1.super_8 3458819 101 + 3762037 GCACUCUCUGCUGACGGUAUCUUUUUGAUACCCUAUAUGUGGGAUUAAUAAAUAUGGUUUCUCUUAUUUU--CUUAAUCUUUUUACUUUAUUUUGGUUUGUUG (((.....))).(((((((((.....))))))........((((((((.(((...((.....))...)))--.))))))))..................))). ( -15.20, z-score = -1.72, R) >droSim1.chrX 16321618 103 + 17042790 GCACUCUCUGCUGACGGUAUCUUUUUGAUACCCUAUAUGUGGGAUUCAUAAAUAUGGUUUCUCUUAUUUUUCCAUAAUCUUUUUACUUUAUUUUGGUUUGCUG .........((.(((((((((.....)))))).....(((((((.....(((((.((....)).))))))))))))...................))).)).. ( -17.40, z-score = -2.10, R) >consensus GCACUCUCUGCUGACGGUAUCUUUUUGAUACCCUAUAUGUGGGAUUCAUAAAUAUGGUUUCUCUUAUUUUU_CAUAAUCUUUUUACUUUAUUUUGGUUUGCUG .........((.(((((((((.....))))))........((((.((((....))))..))))................................))).)).. (-13.41 = -13.63 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:11 2011