| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,137,603 – 21,137,696 |
| Length | 93 |
| Max. P | 0.857586 |
| Location | 21,137,603 – 21,137,696 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.40860 |
| Mean single sequence MFE | -16.20 |
| Consensus MFE | -16.20 |
| Energy contribution | -16.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.13 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.722234 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21137603 93 + 22422827 UUUGGUCAGGCGUAAGUCCUUCUGAUAUUUUUUCAUCAUCUCAGCUUUCGUUUCAUUACUCCAUGGCUUUGGGCUCAAGUCUCCUGUCUAUUU ..(((.((((.(..(((((...((((........))))....((((...((......)).....))))..))))).....).)))).)))... ( -16.20, z-score = -1.13, R) >droSim1.chrX 16292823 93 + 17042790 UUUGGUCAGGCGUAAGUCCUUCUGAUAUUUUUUCAUCAUCUCAGCUUUCGUUUCAUUACUCCAUGGCUUUGGGCUCAAGUCUCCUGUCUAUUU ..(((.((((.(..(((((...((((........))))....((((...((......)).....))))..))))).....).)))).)))... ( -16.20, z-score = -1.13, R) >droSec1.super_8 3443235 93 + 3762037 UUUGGUCAGGCGUAAGUCCUUCUGAUAUUUUUUCAUCAUCUCAGCUUUCGUUUCAUUACUCCAUGGCUUUGGGCUCAAGUCUCCUGUCUAUUU ..(((.((((.(..(((((...((((........))))....((((...((......)).....))))..))))).....).)))).)))... ( -16.20, z-score = -1.13, R) >consensus UUUGGUCAGGCGUAAGUCCUUCUGAUAUUUUUUCAUCAUCUCAGCUUUCGUUUCAUUACUCCAUGGCUUUGGGCUCAAGUCUCCUGUCUAUUU ..(((.((((.(..(((((...((((........))))....((((...((......)).....))))..))))).....).)))).)))... (-16.20 = -16.20 + -0.00)
| Location | 21,137,603 – 21,137,696 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.40860 |
| Mean single sequence MFE | -14.60 |
| Consensus MFE | -14.60 |
| Energy contribution | -14.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.41 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857586 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21137603 93 - 22422827 AAAUAGACAGGAGACUUGAGCCCAAAGCCAUGGAGUAAUGAAACGAAAGCUGAGAUGAUGAAAAAAUAUCAGAAGGACUUACGCCUGACCAAA .......((((........(((((......))).)).......((.(((((....(((((......)))))...)).))).))))))...... ( -14.60, z-score = -1.41, R) >droSim1.chrX 16292823 93 - 17042790 AAAUAGACAGGAGACUUGAGCCCAAAGCCAUGGAGUAAUGAAACGAAAGCUGAGAUGAUGAAAAAAUAUCAGAAGGACUUACGCCUGACCAAA .......((((........(((((......))).)).......((.(((((....(((((......)))))...)).))).))))))...... ( -14.60, z-score = -1.41, R) >droSec1.super_8 3443235 93 - 3762037 AAAUAGACAGGAGACUUGAGCCCAAAGCCAUGGAGUAAUGAAACGAAAGCUGAGAUGAUGAAAAAAUAUCAGAAGGACUUACGCCUGACCAAA .......((((........(((((......))).)).......((.(((((....(((((......)))))...)).))).))))))...... ( -14.60, z-score = -1.41, R) >consensus AAAUAGACAGGAGACUUGAGCCCAAAGCCAUGGAGUAAUGAAACGAAAGCUGAGAUGAUGAAAAAAUAUCAGAAGGACUUACGCCUGACCAAA .......((((........(((((......))).)).......((.(((((....(((((......)))))...)).))).))))))...... (-14.60 = -14.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:08 2011