| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,101,371 – 1,101,465 |
| Length | 94 |
| Max. P | 0.704592 |
| Location | 1,101,371 – 1,101,465 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 65.14 |
| Shannon entropy | 0.66581 |
| G+C content | 0.41763 |
| Mean single sequence MFE | -22.05 |
| Consensus MFE | -9.96 |
| Energy contribution | -10.72 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.704592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1101371 94 + 23011544 AAAGCCUGCAUGAGAGCUUUCU--CUUUUUGCAACUAAUGUGCAUGUUACGUAUACGCCUCGUGUGCAU-AUAUGUACUUAUUUUCCAAGCUGCAGC------ ..(((.((((.(((((....))--)))..))))......((((((((...(((((((...)))))))..-))))))))...........))).....------ ( -25.50, z-score = -1.81, R) >droEre2.scaffold_4929 1145599 99 + 26641161 AAAUCCUUCAUGAGAGCUUCUCC---UUCUGCAGCUGAUGUGCAUGUUACGUAUACGCUCCGUGUGCAU-AUGCACACAUCAUUGAUACCCAUUGAAAAGCAC ...........(((.....))).---.......(((..(((((((((...(((((((...)))))))))-)))))))..(((.((.....)).)))..))).. ( -23.80, z-score = -1.21, R) >droYak2.chr2L 1078511 83 + 22324452 AAAUCCUUCAUGAGAGUUUUCUC-CUUUUUUCAACUAGUGUGCAUGUUACGUAUACGCUCCGUGUGCAU--UGUGUACAUAAAUGC----------------- ..........((((((.......-...))))))....(((((((((....(((((((...)))))))..--)))))))))......----------------- ( -16.90, z-score = -1.51, R) >droSec1.super_14 1054801 96 + 2068291 AAAGUCAGCAAGAGAACUUUUUUUCUUUUUGCAACUAAUGUGCAUGUUACGUAUACGCCUCGUGUGCAC-AUGUGUACUUAUUUUCCAAGCUGCAGC------ ...(.(((((((((((......))))))).........((..(((((...(((((((...)))))))))-)))..))............)))))...------ ( -22.70, z-score = -0.82, R) >droSim1.chr2L 1071794 95 + 22036055 AAAGUCUGCAAGAGAGCUUUUUU-CUUUUUGCAACUAAUGUGCAUGUUACGUAUACGCCUCGUGUGCAC-AUGUGUACUUAUUUUCCAAGCUGCAGC------ ..(((.((((((((((.....))-).))))))))))..((..(((((...(((((((...)))))))))-)))..))....................------ ( -21.60, z-score = -0.06, R) >droGri2.scaffold_15126 4065818 99 + 8399593 AAAGUUUCGACGAGAGCUGGAUA--AACUUACACCAAACACACAAGUUACGCAUACGCCCACUGUGCGUUGUGGUAAUGGAAUCAGUUGCCAAAAUCCGAC-- ..........((.((..(((...--((((....(((....((((....(((((((.......)))))))))))....)))....)))).)))...))))..-- ( -21.80, z-score = -0.28, R) >consensus AAAGCCUGCAUGAGAGCUUUUUC_CUUUUUGCAACUAAUGUGCAUGUUACGUAUACGCCCCGUGUGCAU_AUGUGUACUUAAUUUCCAAGCUGCAGC______ .......................................((((((((...((((((.....))))))...))))))))......................... ( -9.96 = -10.72 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:44 2011