Locus 15799

Sequence ID	dm3.chrX
Location	21,133,875 – 21,133,967
Length	92
Max. P	0.856636

overview

Window 3

Location	21,133,875 – 21,133,967
Length	92
Sequences	4
Columns	92
Reading direction	forward
Mean pairwise identity	83.43
Shannon entropy	0.25983
G+C content	0.48206
Mean single sequence MFE	-25.71
Consensus MFE	-20.66
Energy contribution	-20.85
Covariance contribution	0.19
Combinations/Pair	1.12
Mean z-score	-1.78
Structure conservation index	0.80
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.94
SVM RNA-class probability	0.856636
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 21133875 92 + 22422827
UAUCUGUGUGUAACUACUGUGCAUCUGUGUGCGCUCAACAAAGACCCUUUUGUGCGAUACACAGCCGCACCACUACACGUACAUACAUCGCA
....((((((((......((((..((((((((((...((((((....))))))))).)))))))..)))).........))))))))..... ( -28.76, z-score =  -2.54, R)
>droSim1.chrX 16288953 87 + 17042790
UAUCUGUGUA-----ACUGUGCAUCUGUGUGUGCUCAACAAAGACCCUUUUGUGCGAUACACAGCCGCACCACUACACGUGCAUACAUCGCA
.....(((((-----...((((..((((((((((...((((((....)))))))).))))))))..))))...))))).(((.......))) ( -26.50, z-score =  -1.79, R)
>droSec1.super_8 3439441 87 + 3762037
UAUCUGUGUA-----ACAGUGCAUCUGUGUGUGCUCAACAAAGACCCUUUUGUGCGACACACAGCCGCACCACUACACGUGCAUACAUCGCA
.....(((((-----...((((..((((((((((...((((((....)))))))).))))))))..))))...))))).(((.......))) ( -28.40, z-score =  -2.14, R)
>droYak2.chrX 20310090 74 + 21770863
----UGUGUA-----ACACUGCAUCUGUGUGUGCUUAACAAAGAGCCUUUUGUGCGAUACACUGCCGCACCACUACACACACA---------
----.(((((-----....))))).(((((((((((......)))).....(((((.........)))))....)))))))..--------- ( -19.20, z-score =  -0.63, R)
>consensus
UAUCUGUGUA_____ACAGUGCAUCUGUGUGUGCUCAACAAAGACCCUUUUGUGCGAUACACAGCCGCACCACUACACGUACAUACAUCGCA
....((((((........((((..((((((((((...((((((....)))))))).))))))))..))))...))))))............. (-20.66 = -20.85 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:07 2011