| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,112,616 – 21,112,669 |
| Length | 53 |
| Max. P | 0.713275 |
| Location | 21,112,616 – 21,112,669 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 66.16 |
| Shannon entropy | 0.57773 |
| G+C content | 0.51451 |
| Mean single sequence MFE | -17.80 |
| Consensus MFE | -9.54 |
| Energy contribution | -9.50 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.68 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.713275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21112616 53 + 22422827 --------GGUCUAUGAGUGUGUGGGUGCCCAUACGGGUGUUAAGUGUAUGCUUGUGUACA --------.((.((..((((((..((..(((....)))..)).....))))))..)).)). ( -14.90, z-score = -0.78, R) >droAna3.scaffold_13334 439479 53 - 1562580 --------GAUCUAUUAGUGUGUGGGUGCCCGCACUGAUGUUAAGUUUAUGCUGGCCCACA --------............(((((..(((.(((..(((.....)))..))).)))))))) ( -14.60, z-score = -0.65, R) >droYak2.chrX 20285993 61 + 21770863 GGUCUGUGAGCGCACGAGUGUGUGGGUGCCCGUACGGAUGUUAAGUGUAUGCUUGUAUACA .(((((((.(((((....)))))((....)).))))))).....((((((....)))))). ( -18.50, z-score = -0.48, R) >droSec1.super_8 3419129 61 + 3762037 GGUCUAUGAGCGCGCGAGUGUGUGGGUGCCCGUACGGGUGUUAAGUGUAUGCUUGUGUACA .........(..((((((((((..((..(((....)))..)).....))))))))))..). ( -20.10, z-score = -0.81, R) >droMoj3.scaffold_6482 1053151 53 - 2735782 -------GUGUAUAUGUGGGUGGGCGUGCCCGCA-GCCUACUGAGUCUACUCAUAUGUAUA -------.(((((((((((((((((.......((-(....))).))))))))))))))))) ( -20.90, z-score = -1.99, R) >consensus _______GAGUCUAUGAGUGUGUGGGUGCCCGUACGGAUGUUAAGUGUAUGCUUGUGUACA .........((((((((((((((((....))))))..(((.......))))))))))))). ( -9.54 = -9.50 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:04 2011