Locus 15792

Sequence ID dm3.chrX
Location 21,081,836 – 21,081,958
Length 122
Max. P 0.862953
window21763 window21764

overview

Window 3

Location 21,081,836 – 21,081,933
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 81.68
Shannon entropy 0.23667
G+C content 0.47266
Mean single sequence MFE -22.27
Consensus MFE -20.85
Energy contribution -20.63
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.26
Structure conservation index 0.94
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.96
SVM RNA-class probability 0.862953
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 21081836 97 - 22422827
AUUUCUGGGGGCGCAAAAGCUGACUUCGGGCGCCGAAGAUAACAAUAGCCUCUCAGAGACGAGAAAUAACACGUUGCAUUGAAUACAAUUCAAGAAA
.(((((((((((((....))...((((((...)))))).........))).))))))))..............(((.((((....)))).))).... ( -25.70, z-score =  -1.99, R)
>droSec1.super_8 3389714 79 - 3762037
AUUUCUGGGGGCACAAGAGCUGACUUCGGGCGCCGAAGAUUACAAUAGCCUCGCAGAGACGA------------------GAAAGCAAUUCAAGAAA
.(((((((((((.((.....)).((((((...)))))).........))))).))))))...------------------................. ( -21.50, z-score =  -1.16, R)
>droSim1.chrX_random 5453765 79 - 5698898
AUUUCUGGGGGCACAAGAGCUGACUUCGGGCGUCGAAGAUUACAAUAGCCUCGCAGAGACGA------------------GAAUGCAAUUCAAGAAA
.(((((((((((.((.....)).(((((.....))))).........))))).))))))...------------------((((...))))...... ( -19.60, z-score =  -0.63, R)
>consensus
AUUUCUGGGGGCACAAGAGCUGACUUCGGGCGCCGAAGAUUACAAUAGCCUCGCAGAGACGA__________________GAAUGCAAUUCAAGAAA
.(((((((((((.((.....)).((((((...)))))).........))))).))))))...................................... (-20.85 = -20.63 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 21,081,867 – 21,081,958
Length 91
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 77.28
Shannon entropy 0.38036
G+C content 0.49481
Mean single sequence MFE -29.78
Consensus MFE -20.78
Energy contribution -20.78
Covariance contribution -0.00
Combinations/Pair 1.16
Mean z-score -1.31
Structure conservation index 0.70
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.38
SVM RNA-class probability 0.668182
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 21081867 91 - 22422827
AGUUAUUUCGGGUUAAAUCCAACGA-------------------AUUUCUGGGGGCGCAAAAGCUGACUUCGGGCGCCGAAGAUAACAAUAGCCUCUCAGAGACGAGAAA
.....(((((((......)).....-------------------.(((((((((((((....))...((((((...)))))).........))).))))))))))))).. ( -29.30, z-score =  -2.25, R)
>droEre2.scaffold_4690 17612513 110 - 18748788
AGUUUUUGCGGGUUAAUUGCAACGAUUUGUGGCCAGAAGACGGGCUUUUCUGGGGCACAAGAACUGGCUUCGGGCGCCGAAGAUUACAAUAGCCUCGCGGAGUCGGGAAG
.(.((((((((((((.(((......((((((.((((((((.....)))))).)).))))))......((((((...))))))....)))))))).))))))).)...... ( -35.00, z-score =  -0.47, R)
>droYak2.chrX 20253192 110 - 21770863
AGUUAUUGCGGGCUAAUUCCAACGAUUUGUGACCAAAGACGGGCAUUUCUGGGGGCACACGACCUGGCUUCGGACGCCGAAGAUUACAAUAGCCUUGCAGAGUCGAGAAA
.....((((((((((...(((......((((.((..(((........)))..)).)))).....)))((((((...)))))).......))))).))))).......... ( -29.00, z-score =   0.22, R)
>droSec1.super_8 3389727 91 - 3762037
AGUUAUUUCGGGUUGAUUCCAACAA-------------------AUUUCUGGGGGCACAAGAGCUGACUUCGGGCGCCGAAGAUUACAAUAGCCUCGCAGAGACGAGAAA
.....(((((.((((....))))..-------------------.(((((((((((.((.....)).((((((...)))))).........))))).))))))))))).. ( -28.80, z-score =  -2.21, R)
>droSim1.chrX_random 5453778 91 - 5698898
AGUUAUUUCGGGUUGAUUCCAACAA-------------------AUUUCUGGGGGCACAAGAGCUGACUUCGGGCGUCGAAGAUUACAAUAGCCUCGCAGAGACGAGAAU
.....(((((.((((....))))..-------------------.(((((((((((.((.....)).(((((.....))))).........))))).))))))))))).. ( -26.80, z-score =  -1.85, R)
>consensus
AGUUAUUUCGGGUUAAUUCCAACGA___________________AUUUCUGGGGGCACAAGAGCUGACUUCGGGCGCCGAAGAUUACAAUAGCCUCGCAGAGACGAGAAA
.....(((((((......))..........................((((((((((.((.....)).((((((...)))))).........))))).))))).))))).. (-20.78 = -20.78 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:06:00 2011