| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,081,328 – 21,081,423 |
| Length | 95 |
| Max. P | 0.934600 |
| Location | 21,081,328 – 21,081,423 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 60.22 |
| Shannon entropy | 0.72008 |
| G+C content | 0.50314 |
| Mean single sequence MFE | -33.17 |
| Consensus MFE | -13.64 |
| Energy contribution | -15.88 |
| Covariance contribution | 2.24 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.934600 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21081328 95 + 22422827 ------------------GUAAAUAGACGUGUUGCAUGUUGCCUUUUUUCUCUCUGUACUGUUGCUUCCUAAAACAUGCACAAGUGAUCGGUGGAGAGGGGGAGAGGCGGGGG ------------------.......((((((...))))))(((((((..(.((((.((((((..(((..............)))..).))))).)))))..)))))))..... ( -32.14, z-score = -2.14, R) >droSim1.chrX_random 5453256 110 + 5698898 --UUACUGCCACUUGAGUGUGGAAAUAGACGUUGCAUGGUGCCUUUUUUCUCUCUGUACUGUUGCUUCCUAAAACAUGCAGAAGUGAUCGGCGGAGAGGGG-CGCGGCUGGGG --...(((((......(((..(.........)..))).((((((.....((((((((...((..((((............))))..))..)))))))))))-)))))).)).. ( -34.70, z-score = -0.43, R) >droSec1.super_8 3389204 111 + 3762037 --UUACUGCCACUUGAGUGUGGAAAUAGACGUUGCACGGUGCAUUUUUUCUCUCUGUACUGUUGCUUCCUAAAACAUGCAGAAGUGAUCGGCGGAGAGGGGGCGCGGCGGGGG --...(((((......(((..(.........)..))).((((....(..((((((((...((..((((............))))..))..))))))))..))))))))))... ( -39.20, z-score = -1.69, R) >droYak2.chrX 20252717 81 + 21770863 ------------------------------AUUGUAAG--GCCUUUUUUCUCUCUGUGCUGUGGCAUCCUAAAACAUGCAGAAGUAAGCGGCGGAGAGGGGGUGUGGCAGGGG ------------------------------........--(((..((..(((((((((((...((((........)))).......))).))))))))..))...)))..... ( -27.00, z-score = -1.03, R) >droPer1.super_22 1622634 109 - 1688296 UAAUGCCAUCGAAAUAAUGCUAAUCGACA-AUUGUUUGCCGUCUGCUCUUCUUUGGUUUUAUUUUGAUGGCAAUUAUGCUU---UCACCAUUAGAGCGGGUGCGAGGCGGGGG ...((((((((((((((.(((((.((.((-(....))).))...........))))).))))))))))))))....(((((---(((((.........)))).)))))).... ( -32.80, z-score = -1.74, R) >consensus ___U_C___C_____A_UGUGAAAAGACA_GUUGCAUGGUGCCUUUUUUCUCUCUGUACUGUUGCUUCCUAAAACAUGCAGAAGUGAUCGGCGGAGAGGGGGCGAGGCGGGGG ........................................(((..((((((((((((...((((((((............))))))))..))))))))))))...)))..... (-13.64 = -15.88 + 2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:58 2011