| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,054,952 – 21,055,064 |
| Length | 112 |
| Max. P | 0.890681 |
| Location | 21,054,952 – 21,055,064 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 56.22 |
| Shannon entropy | 0.80821 |
| G+C content | 0.45049 |
| Mean single sequence MFE | -26.22 |
| Consensus MFE | -6.25 |
| Energy contribution | -7.62 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.62 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.890681 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21054952 112 - 22422827 UCUCUUCUCUGCGCUGCCGUUACUACGCUCUUAUUUGUUGCUUAACUGGCAACAGGCAGG--CCCUUCUUCCGCAGUUGACAUCUGCAUU------UGUGCGGAGUUUUAACACCUCAAA ......((((((((((((((....)).........(((((((.....)))))))))))..--..........((((.......))))...------.))))))))............... ( -32.20, z-score = -2.35, R) >dp4.chr2 20539157 100 - 30794189 --UCCAUUUUCAGCCA--GUCAUGAUGAUUUGUUUACUAGUGAAACUUGCAAAGUCCAAAGUUCCACCAUUGACAGAGUUUAUCAAAAAU------UUCGUUAAGUUAAA---------- --..............--....((((((((((((.....(((.(((((..........))))).)))....))))))..)))))).....------..............---------- ( -13.50, z-score = -0.19, R) >droSim1.chrX 16230864 97 - 17042790 UCUCUUUUUCGCACUGC-----GUACGCUCUUAUUUGUUGCGUAA------------------CCUUCUUCCGCAGUUGACAUCUGCAUUAAUAUUAGUGCAGAGUUUUAACUCCUUACA ........(((.(((((-----((((((...........))))).------------------........)))))))))..(((((((((....)))))))))................ ( -23.80, z-score = -3.62, R) >droSec1.super_8 3362917 107 - 3762037 UCUCUUUUUCGCACUGC-----GAACGCUCUUAUUUGUUGCGUAACGGGCAAUAAUCAGG--CCCUUCUUCCGCAGUUGACAUAUGCAUU------AGUGCGGAGUUUUAACUUCUCACA ........(((.(((((-----(.((((...........))))...((((.........)--)))......)))))))))..........------.(((.(((((....))))).))). ( -28.90, z-score = -2.21, R) >droYak2.chrU 19761835 106 - 28119190 -----GCUUCGCACUGCCGUUACUACGCUUUGCCUUGUUGCGUAACUGGCAACGG-CAGG--CCCUCCUUAUGCGAUCACUAUUCGCAUU------UGUGCGGAGUUUUAACUCCUCACA -----.....((.((((((((.((((((...........))))....)).)))))-))))--).......((((((.......)))))).------((((.(((((....))))).)))) ( -37.40, z-score = -3.93, R) >droEre2.scaffold_4929 2405190 94 + 26641161 UUUCCGCUUCGUACCGCCGUCACUUCGCUUUGAUUUUUUGCGUAACUGGCAUCAGGCAGG-CCCCUUCUUCUGCAGAUGACAUCUGCAUU------UGCGC------------------- ....(((...(..(((((((((.(((((...........))).)).))))....))).))-..).......(((((((...)))))))..------.))).------------------- ( -21.50, z-score = 0.08, R) >consensus UCUCUUCUUCGCACUGC_GU_ACUACGCUCUGAUUUGUUGCGUAACUGGCAACAG_CAGG__CCCUUCUUCCGCAGUUGACAUCUGCAUU______UGUGCGGAGUUUUAACUCCUCACA ......(((.((((.........(((((...........)))))............................((((.......))))..........)))).)))............... ( -6.25 = -7.62 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:54 2011