| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,034,696 – 21,034,818 |
| Length | 122 |
| Max. P | 0.863882 |
| Location | 21,034,696 – 21,034,818 |
|---|---|
| Length | 122 |
| Sequences | 6 |
| Columns | 122 |
| Reading direction | forward |
| Mean pairwise identity | 69.67 |
| Shannon entropy | 0.57908 |
| G+C content | 0.50546 |
| Mean single sequence MFE | -37.03 |
| Consensus MFE | -16.50 |
| Energy contribution | -17.95 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.863882 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21034696 122 + 22422827 UUGAGCGAUUCUAUGGCUCUCUUGGCCUCGAUUAAACUAGUAAACUGGAUAUACCCGCAUGUAUCGAUCACCAGCGAGCCAAGAAUUCGGCCAUAGGGAAAGCAGAGCAAAGACAGCUCCUG ....((..((((((((((.(((((((.(((.......(((....)))((((((......)))))).........))))))))))....))))))))))...)).((((.......))))... ( -38.00, z-score = -2.13, R) >droEre2.scaffold_4644 1661714 122 - 2521924 UUAAGCGCCUCUAUGGCGGACUUGGCCUCGCUCUCCCUUUCAAACUGGACAAACCCGUGAUUCUGGACGACCAGCGAGCCAAGGAUUUUGCCAAAGGGAACGCAGAGCAUAGCCAGCUCCUG ....(((.((((.(((((((((((((.(((((((((...(((...(((......))))))....))).))...))))))))))...))))))).))))..))).((((.......))))... ( -41.60, z-score = -1.64, R) >droYak2.chrX 20966711 122 - 21770863 UCAAGGAUCUGUAUGGCGGUCUUGGCGUCGCUCUCCCUUGCAAACUGGAUAAACCCGUGGUUUCCGAGGACCAGCGAGCCAAGGAUUUCGCCGAAUGGUAUGCAGAGCCUAGCUAGCUCGUG ...(((.(((((((((((((((((((.(((((...(((((.(((((((......))..))))).)))))...))))))))))))...))))).......))))))).)))............ ( -45.71, z-score = -1.69, R) >droSec1.super_10 2571702 122 - 3036183 UUGAGCGAUUCUAUGGCUCUCUUGGCCUCGGUUAAACUAUUAAACUGGAUAUAUCCGUAGGUAUCGAUCACCAGCGAGCCAACGAUUCGGCCAUAGGGCACGCAGAGCAAAGACAGCUCCUG ....(((.((((((((((.(((((((.((((((.........)))))).......(((.(((.......))).))).))))).))...))))))))))..))).((((.......))))... ( -37.10, z-score = -1.39, R) >droSim1.chrX 16541185 122 - 17042790 UUGAGCGAUUCUAUGGCUCUCUUGGCCUCGGUUGAACUAUUAAACUGGAUAUAUCCGUAGGUAUCGAUCACCAGCGAGCCAACGAUUCGGCCAUAGGGCGCGCAGAGCAAAGACAGCUCCUG .((.(((.((((((((((.(((((((.((((((.........)))))).......(((.(((.......))).))).))))).))...))))))))))))).))((((.......))))... ( -40.40, z-score = -1.53, R) >droVir3.scaffold_13049 14760362 122 - 25233164 UUUAACGCAUUCGCACAUUUGUUAGCGAUUUCCUCGCUCUCAAAUUGAACAAAACCGAAAUUCUUCUGCACCAACGAACCCAAAACUUUUCCGUAUGGAUGACAAAUGCUUUCCAGCUCCUC ......(((((.(((.(((((..(((((.....)))))..)))))...........(((....)))))).((((((...............))).)))......)))))............. ( -19.36, z-score = -1.12, R) >consensus UUGAGCGAUUCUAUGGCUCUCUUGGCCUCGCUCUAACUAUCAAACUGGAUAAACCCGUAGGUAUCGAUCACCAGCGAGCCAAGGAUUCGGCCAUAGGGAACGCAGAGCAAAGACAGCUCCUG ....((..((((((((((...(((((.(((..............((((......................))))))))))))......))))))))))...)).((((.......))))... (-16.50 = -17.95 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:50 2011