| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,034,559 – 21,034,610 |
| Length | 51 |
| Max. P | 0.759918 |
| Location | 21,034,559 – 21,034,610 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 93.46 |
| Shannon entropy | 0.09003 |
| G+C content | 0.50980 |
| Mean single sequence MFE | -6.74 |
| Consensus MFE | -6.74 |
| Energy contribution | -6.74 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.99 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.759918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21034559 51 + 22422827 CCACGAGGAUAGUUUCAUCCACAUCAGACCACUCGAUCCUCCUCCUAUUCG ....((((((.......((.......)).......)))))).......... ( -6.74, z-score = -0.81, R) >droSim1.chrX 16541048 51 - 17042790 CCACGAGGAUAACUUCAUCCGCAUCAGAAAACUCGAUCCUCCUCCUAUUCG ....((((((.......((.......)).......)))))).......... ( -6.74, z-score = -1.03, R) >droSec1.super_10 2571565 51 - 3036183 CCACGAGGAUAACUUCAUCCGCAUCAGACCACUCGAUCCUCCUCCUAUUCG ....((((((.......((.......)).......)))))).......... ( -6.74, z-score = -1.12, R) >consensus CCACGAGGAUAACUUCAUCCGCAUCAGACCACUCGAUCCUCCUCCUAUUCG ....((((((.......((.......)).......)))))).......... ( -6.74 = -6.74 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:49 2011