| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,019,779 – 21,019,972 |
| Length | 193 |
| Max. P | 0.500000 |
| Location | 21,019,779 – 21,019,972 |
|---|---|
| Length | 193 |
| Sequences | 3 |
| Columns | 196 |
| Reading direction | forward |
| Mean pairwise identity | 50.17 |
| Shannon entropy | 0.70688 |
| G+C content | 0.46784 |
| Mean single sequence MFE | -55.47 |
| Consensus MFE | -19.78 |
| Energy contribution | -19.70 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 21019779 193 + 22422827 AGGCAAGAGUCGCCACCCUAAACCAGUCAACAGAGGUAUACACAUUCGAUAAUAACAGAGCUCGUACUGAUAUCAACGUGACAAUCGUUAACGAGGCAGCACC---UAUGUGGGCCACAUAUGAGUGGAGAGUGGACGAGUGGAAAUUAGGUGACCACAACAUCAUUACUUUUGUGGCCGAACCAACUACCGCAAG .........(((((((.((...(((.(((...(.(((...(((((..((((....(((........))).))))...(((....(((....))).....))).---.))))).))).)...))).))))).)))).)))((((......(((..((((((...........))))))....))).....))))... ( -45.80, z-score = 0.62, R) >droAna3.scaffold_13266 566336 168 - 19884421 ------AUGCGCAGGUUCUGAACGAGCCUAGUGAGUGGUACACUUUAGACGGUCCG-------------------AUGAUACUUUUGUGUAUAAGGCAGCUAUGAGAAUGUGUGCUUUUCAAUGGAGUGUAUUGGGGGGUCAUGGCGUGAGUGAUAACAAUCCGAAUAAGAUUGUGGUGACCCAUACCUUAGC--- ------((((((((((((.....))))))..((((.(((((((..(((...(.((.-------------------...((((....))))....)))..))).......))))))).)))).....)))))).((.(((((((.((....))....((((((.......)))))).)))))))...)).....--- ( -52.50, z-score = -1.59, R) >droVir3.scaffold_2392 79 190 - 1957 ------AUGUUCGGGUCGUUAACGAACCCAGUGAGUGGUAUACGUUUGCGGGUCCGGUGGGUCAGAGUGACAUUGAUGUUACUCUAGUGAAUGCGGUGGCAAUGAGUAUGUAUGCUUUUCAUUGGUGUGUACUAGGUGGGCUUGGUGUGAGUGACCACAAUCCGAUUGAGAUUGUUGUCACACACACUAUUACGAG ------......((((((....)).))))((((((.((((((((((..(.(..((...))..)(((((((((....))))))))).)..)))((....)).........))))))).))))))(((((((((((((....))))))....(((((.((((((.......)))))).))))))))))))........ ( -68.10, z-score = -2.26, R) >consensus ______AUGUCCAGGUCCUAAACGAGCCAAGUGAGUGGUACACAUUAGACGGUCCG___G_UC__A_UGA_AU__AUGUUACUAUAGUGAAUGAGGCAGCAAUGAGUAUGUGUGCUUUUCAUUGGUGUGUACUGGGCGGGCAUGGAGUGAGUGACCACAAUCCGAUUAAGAUUGUGGUCACACAAACUAUAGC_AG ............((((.........))))......((((((((((((...............................((((....))))....((((((.........)).))))......)))))))))))).........((.(((.(((((.((((((.......)))))).))))).))).))........ (-19.78 = -19.70 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:49 2011