Locus 15781

Sequence ID	dm3.chrX
Location	21,014,542 – 21,014,608
Length	66
Max. P	0.735770

overview

Window 9

Location	21,014,542 – 21,014,608
Length	66
Sequences	5
Columns	67
Reading direction	forward
Mean pairwise identity	67.32
Shannon entropy	0.59192
G+C content	0.47440
Mean single sequence MFE	-18.10
Consensus MFE	-6.06
Energy contribution	-6.94
Covariance contribution	0.88
Combinations/Pair	1.40
Mean z-score	-1.97
Structure conservation index	0.33
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.54
SVM RNA-class probability	0.735770
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 21014542 66 + 22422827
-AUGAUUUUUCUGAGUGUAGGACAGCUAGCCGGAAACGCAGACAAAAGCUGCCUGAAAAGGAAAACG
-....(((((((.....((((.(((((...((....))........)))))))))...))))))).. ( -17.50, z-score =  -2.05, R)
>droSec1.super_8 3351848 67 + 3762037
AUGAUUUUUUCUUAGUGUAGGACAGCUAGCCGGAAACGCAGACAAAAGCUGCCUGAAAAGGAAAACG
.....((((((((....((((.(((((...((....))........)))))))))..)))))))).. ( -17.50, z-score =  -1.96, R)
>droYak2.chrX 20213864 65 + 21770863
--UUGUUUUUCUCAGUGUAGGCCAGCUAGCCGGAAACGCAGACAAAAGCAGUCCGAAUAGGAAAACG
--((((((((.((.((((.(((......)))....)))).)).))))))))(((.....)))..... ( -16.50, z-score =  -1.51, R)
>droEre2.scaffold_4690 17579200 65 + 18748788
--ACGUUUUUCCAAGUGUAGGCCAGCUAGCCGGAAACGCAGACAAAGGCAGUCUGAAUGGGAAAACG
--.((((((((((......(((......)))(....).(((((.......)))))..)))))))))) ( -23.30, z-score =  -3.10, R)
>droMoj3.scaffold_6482 1827887 56 + 2735782
--AUAAUUUGUGUGCUCUGCGCCGGGCAACCGGAAACGAACAUUGUA-CAAGGCAAACG--------
--.......((.(((..((..((((....))))..((((...)))).-))..))).)).-------- ( -15.70, z-score =  -1.23, R)
>consensus
__AUAUUUUUCUUAGUGUAGGCCAGCUAGCCGGAAACGCAGACAAAAGCAGCCUGAAAAGGAAAACG
......((((((.....((((...(((...((....))........)))..))))....)))))).. ( -6.06 =  -6.94 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:47 2011